[BBC] More Bioinformatics Courses @ Edinburgh Genomics

[TRAIN edgenomics-training]

Dear All

We have another few courses up and running here at Edinburgh Genomics this spring: see below for details and how to sign up!

Introduction to Python for Biologists, 5-7&10-12 May 2021, 9.30am - 4.30pm<https://genomics.ed.ac.uk/services/introduction-python-biologists-0>

Python is a dynamic, readable language that is a popular platform for all types of bioinformatics work, from simple one-off scripts to large, complex software projects. This workshop is aimed at complete beginners and assumes no prior programming experience. It gives an overview of the language with an emphasis on practical problem-solving, using examples and exercises drawn from various aspects of bioinformatics work. The workshop is structured so that the parts of the language most useful for bioinformatics are introduced as early as possible, and that students can start writing plausibly-useful programs after the first few sessions. After completing the workshop, students should be in a position to (1) apply the skills they have learned to tackling problems in their own research and (2) continue their Python education in a self-directed way.

Tutors: Tim Booth (Bioinformatician/Programmer, Edinburgh Genomics), Nathan Medd (Training Manager, Edinburgh Genomics)
Registration fee: £450/£473/£585 (UoE/Other Uni/Industry)

<https://genomics.ed.ac.uk/services/long-read-bioinformatics>
Long-read Bioinformatics, 17 - 19 May 2021, 10am - 3pm<https://genomics.ed.ac.uk/services/long-read-bioinformatics>

RNA sequencing (RNA-seq) is the method of choice for transcriptome profiling. Nevertheless, it is a non-trivial task to transform the vast amount of data obtained with high-throughput sequencers into useful information. Thus, RNA-seq data analysis is still a major bottleneck for most researchers in this field. The ability of correctly interpreting RNA-seq results, as well as knowledge on the intrinsic properties of these data, are essential to avoid incorrect experimental designs and the application of inappropriate analysis methodologies.

The aim of this workshop is to familiarise researchers with RNA-seq data and to initiate them in the analysis by providing lectures and practicals on analysis methodologies. In the practicals Illumina-generated sequencing data and various widely used software programs will be used.

Tutors: Frances Turner (Bioinformatician, Edinburgh Genomics), Urmi Trivedi (Bioinformatician, Edinburgh Genomics) Nathan Medd (Training Manager, Edinburgh Genomics)

Registration fee: £150/£158/£195 (UoE/Other Uni/Industry)


Introduction to Metagenomic Data Analysis, 31 May - 2 June 2021, 10am - 3pm <https://genomics.ed.ac.uk/services/introduction-metagenomic-data-analysis> (Rescheduled from March<https://genomics.ed.ac.uk/services/introduction-metagenomic-data-analysis>)<https://genomics.ed.ac.uk/services/introduction-metagenomic-data-analysis>

The ability to identify organisms from traces of genetic material in environmental samples has reshaped the way we see life on earth. Especially for microorganisms, where traditional identification is hard or near impossible, metagenomic techniques have granted us unprecedented insight into the microbiome of animals and the environment more broadly.

In this course you will be introduced to methods used for assembly from metagenomics samples. Attendees will use tools to assemble metagenome assembled genomes (MAGs) from short read and long read data. We will discuss the different approaches and tools available for these assemblies and the benefits and limitations of each options.

Tutors: Urmi Trivedi (Bioinformatician, Edinburgh Genomics) Nathan Medd (Training Manager, Edinburgh Genomics)

Registration fee: £250/£263/£325 (UoE/Other Uni/Industry)


For more courses coming soon please check out our training web-page: https://genomics.ed.ac.uk/services/training

Kind Regards

Nathan Medd

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Training and Outreach Manager - Edinburgh Genomics
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