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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span lang="EN-US">BioSB Course Matlab, 20 October 2015, Wageningen<o:p></o:p></span></b></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span lang="EN-US" style="color:black">Website:
</span></b><span style="color:black"><a href="http://biosb.nl/education/course-portfolio-2/course-matlab/"><span lang="EN-US" style="color:black">http://biosb.nl/education/course-portfolio-2/course-matlab/</span></a></span><span lang="EN-US" style="color:black">
.<b><br>
Coordinators: </b>Hans Stigter (WUR), Celia van Gelder (BioSB, </span><span style="color:black"><a href="mailto:celia.van.gelder@biosb.nl"><span lang="EN-US" style="color:black">celia.van.gelder@biosb.nl</span></a></span><span lang="EN-US" style="color:black">)<b><br>
Registration:</b> <a href="http://biosb.nl/education/course-portfolio-2/course-matlab/enrollment-course-matlab/">
<span style="color:black">http://biosb.nl/education/course-portfolio-2/course-matlab/enrollment-course-matlab/</span></a>
<br>
<b>Please note that if you are (or become) a member of BioSB this course is free of charge for PhD students and with reduced fee for other researchers!</b><br>
<br>
<b>Goal</b><br>
The main goal of this course is to get acquainted with Matlab software for use within Systems Biology. After this introductory course you will have gained the basic knowledge to pursue further use via self-study of Matlab in order to apply more advanced programming
techniques within Matlab in your own research. </span><span style="color:black">In summary, the sub-goals are:</span><b><span lang="EN-US" style="color:black"><o:p></o:p></span></b></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2"><![if !supportLists]><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif""><span style="mso-list:Ignore">1.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">To learn the philosophy behind Matlab and its syntax<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo2"><![if !supportLists]><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif""><span style="mso-list:Ignore">2.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">To program simple Systems Biology models in Matlab (in ordinary differential equation format) and to solve these differential equations
with Matlab<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif""><o:p> </o:p></span></p>
<p class="MsoListParagraph" style="margin-left:0cm"><b><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">Programme</span></b><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">09:45 Coffee/Tea<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">10:00 Welcome<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">10:05 Introduction Matlab Basics (functions, variables, matrices, etc)<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">10:45 Advanced Programming (vectorised thinking, solving dynamic ordinary differential equation models in Matlab, parameter estimation
for ODE-models)<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">12:00 Afternoon: Solving basic and advanced problems in Matlab – hands-on experience on a PC. Exercises will be provided, but you
can also bring your own problems that you have encountered in your own research.<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">12:30 Lunch<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">15:00 Coffee/tea<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:0cm;text-indent:35.4pt"><span lang="EN-GB" style="font-size:11.0pt;line-height:115%;font-family:"Calibri","sans-serif"">16:30 End<o:p></o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="color:black">Target audience<br>
</span></b><span lang="EN-US" style="color:black">Primarily targeting researchers from academia, but participants from the private sector are also welcome. The course focusses on the use of Matlab for building dynamic Systems Biology Models in terms of ordinary
differential equations.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:black"> <o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="color:black">Course Description<br>
</span></b><span lang="EN-US" style="color:black">This is a one-day introduction to the possibilities of Matlab as a programming environment for simulation and analysis of biological models. We will start with a simple introduction of the basics of Matlab (matrices,
vectors, manipulation of matrices and presentation of data). Having obtained some basic programming knowledge (writing of simple scripts and functions in Matlab), we will move on to more advanced topics. These include programming and solving ordinary differential
equation models (ODEs) and the concept of “vectorized thinking” while writing Matlab-code. Finally, calibration of parameters in ODE type of models using measured data will be discussed and examples will be given. The course also includes the basics of presenting
your results (graphing) in various types of plots that can easily be drawn in Matlab. Participants will, of course, get hands-on experience with Matlab and write code themselves in a practical.<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><span lang="EN-US" style="color:black"><br>
<b>BioSB Education Programme</b><br>
This course is part of the Education Programme of BioSB, the Netherlands Bioinformatics and Systems Biology Research School, which offers training and education in bioinformatics and systems biology. More information about BioSB can be found at
</span><span style="color:black"><a href="http://www.biosb.nl/"><span lang="EN-US" style="color:black">www.biosb.nl</span></a></span><span lang="EN-US" style="color:black"> or via
</span><span style="color:black"><a href="mailto:education@biosb.nl"><span lang="EN-US" style="color:black">education@biosb.nl</span></a></span><span lang="EN-US" style="color:black">.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Dr. Celia W.G. van Gelder<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Education Manager BioSB<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Coordinator Education CMBI<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Programme Manager Learning DTL/ELIXIR-NL<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">tel. +31613375327<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">e-mail:
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><a href="mailto:Celia.vanGelder@radboudumc.nl"><span lang="EN-US" style="color:black">Celia.vanGelder@radboudumc.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">websites:
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><a href="http://www.nbic.nl/"><span lang="EN-US" style="color:black">www.nbic.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><a href="www.biosb.nl"><span lang="EN-US" style="color:black">www.biosb.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><a href="http://www.cmbi.ru.nl/"><span lang="EN-US" style="color:black">www.cmbi.ru.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><a href="www.dtls.nl"><span lang="EN-US" style="color:black">www.dtls.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Postal address:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">CMBI 260<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">Radboud University Nijmegen-Medical Centre<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">PO Box 9101<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:black">6500 HB Nijmegen The Netherlands<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:Consolas;color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
</div>
<p style="font-size:13px;font-family:arial;">Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629.<br>
The Radboud university medical center is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.<br>
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