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<p class="MsoNormal"><span style="color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-bottom:12.0pt;line-height:12.65pt"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">BioSB Course on Managing and Integrating Life Science Information</span></b><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:#1F497D">:
</span></b><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Approaches using Linked Data and Semantics</span></b><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:#1F497D">
</span></b><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">(4<sup>th</sup> edition)<br>
<br>
</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Course coordinators: Marco Roos, Katy Wolstencroft<br>
<br>
<u>Date:</u> 30 November – 4 December 2015 <br>
<u>Location:</u> SURF, Utrecht, the Netherlands<br>
<u>Website: <a href="http://biosb.nl/education/course-portfolio/course-managing-and-integrating-information-in-the-life-sciences/">
<span style="color:windowtext">http://biosb.nl/education/course-portfolio/course-managing-and-integrating-information-in-the-life-sciences/</span></a>.
</u><br>
<u>Registration:</u> <a href="http://biosb.nl/education/course-portfolio/course-managing-and-integrating-information-in-the-life-sciences/enrollment-milsi-2015/">
<span style="color:windowtext">http://biosb.nl/education/course-portfolio/course-managing-and-integrating-information-in-the-life-sciences/enrollment-milsi-2015/</span></a> .Please not that this course is free of charge for PhDs who are or will become a member
of the BioSB research school, and with a reduced fee for other researchers who are or will become a member of BioSB. More information about the BioSB membership can be found here:
<a href="http://biosb.nl/about/members/biosb-membership-information/"><span style="color:windowtext">http://biosb.nl/about/members/biosb-membership-information/</span></a> .<br>
<u>Course flyer</u>: <a href="http://biosb.nl/wp-content/uploads/2013/08/Wolstencroft_Roos_Course_2015_June.pdf">
<span style="color:windowtext">http://biosb.nl/wp-content/uploads/2013/08/Wolstencroft_Roos_Course_2015_June.pdf</span></a>
<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><br>
Target audience</span></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><br>
This course is for bioinformaticians who would like to learn about leading-edge data and knowledge integration solutions. You will learn (1) powerful and flexible approaches to data and information management for your bioinformatics application (Semantic Web
and Linked Data), (2) how to work with data across remote locations, for instance by applying Web Services and workflows, (3) how to publish your own data to make it available and reusable for the rest of the community. We assume a basic understanding of bioinformatics
programming for the hands on sessions. It would suit previous user participants of
<a href="http://www.dtls.nl/fair-data/byod/"><span style="color:windowtext">BYOD</span></a> meetings who would like more hands-on experience of data integration. It would also suit data providers who would like to explore new ways of serving their data or integrating
it with other resources<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Description</span></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><br>
The amount of Life Science data available in the public domain is a vast and growing resource for bioinformatics research. There are over 20 million papers in PubMed and over 1600 biological databases. In many cases finding and applying the information from
these resources is far from trivial. Following this course will show you techniques for working with these distributed resources, which includes using the web of Linked data and scientific workflows. It will also focus on methods for using or linking your
own data into this large distributed Semantic Web of resources, in order to ensure that your data is
<a href="http://www.dtls.nl/fair-data/byod/"><span style="color:windowtext">FAIR</span></a> (Findable, Accessible, Interoperable and Reusable).<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">This course introduces modern techniques for the management of life science data and
knowledge for bioinformatics applications. After following this course students should be able to start creating their first applications based on these technologies or make more informed design decisions for their current application.<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">In this course you will learn about:<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><span style="mso-list:Ignore">1.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Linked Data and the Semantic Web technologies that underpin it<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><span style="mso-list:Ignore">2.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">How you can use Linked Data for data and knowledge integration in the Life Sciences<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><span style="mso-list:Ignore">3.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Available Linked Data resources in the public domain and large-scale projects that use these resources<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><span style="mso-list:Ignore">4.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">How you can integrate your own data with Linked Data resources<o:p></o:p></span></p>
<p class="MsoListParagraph" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><span style="mso-list:Ignore">5.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">How you can combine data integration and analysis over distributed resources, using Web Services and workflows<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"><br>
Lecturers: </span></u><span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext"> Marco Roos, Katy Wolstencroft, Frank van Harmelen, Paul Groth, Simon Jupp, Jesse van Dam, and others TBC<br>
.<u><br>
Programme</u><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Monday – Introduction to Semantic Interoperability and the Semantic Web<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;text-indent:35.4pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">The Semantic Web primer, an introduction to RDF and Linked Data<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Tuesday – The Semantic Web in Use. Querying public Linked Data resources<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;text-indent:35.4pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Querying Linked Data with SPARQL, using public Linked Data resources from the EBI<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Wednesday – The Semantic web in use (2) – Systems and guidelines<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;text-indent:35.4pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Guidelines and best practices for Linked Data, Case study Open PHACTS – using Linked Data for research<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Thursday – Making Data Understandable and Searchable<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;text-indent:35.4pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Methods for annotating and providing Linked Data, using and understanding ontologies<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Friday – Using, Integrating and Analysing Data<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;text-indent:35.4pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Leelawadee","sans-serif";color:windowtext">Using scientific workflows and web services to integrate and analyse Linked Data and other kinds of data<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Dr. Celia W.G. van Gelder<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Education Manager BioSB<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Coordinator Education CMBI<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Programme Manager Learning DTL/ELIXIR-NL<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">tel. +31613375327<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">e-mail:
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><a href="mailto:Celia.vanGelder@radboudumc.nl"><span lang="EN-US" style="color:windowtext">Celia.vanGelder@radboudumc.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">websites:
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><a href="http://www.nbic.nl/"><span lang="EN-US" style="color:windowtext">www.nbic.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><a href="www.biosb.nl"><span lang="EN-US" style="color:windowtext">www.biosb.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><a href="http://www.cmbi.ru.nl/"><span lang="EN-US" style="color:windowtext">www.cmbi.ru.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">,
</span><span style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><a href="www.dtls.nl"><span lang="EN-US" style="color:windowtext">www.dtls.nl</span></a></span><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Postal address:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">CMBI 260<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">Radboud University Nijmegen-Medical Centre<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">PO Box 9101<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial","sans-serif";color:windowtext">6500 HB Nijmegen The Netherlands<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:Consolas;color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:windowtext"><o:p> </o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:15.0pt;line-height:14.25pt;background:white;vertical-align:baseline">
<span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:windowtext"><o:p> </o:p></span></p>
</div>
<p style="font-size:13px;font-family:arial;">Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629.<br>
The Radboud university medical center is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.<br>
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