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<div class="">Thanks Bert,</div>
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<div class="">We also have this PhD opportunity available with the University of St Andrews, if any of you might know any students who could be interested:</div>
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<div class=""><a href="http://www.findaphd.com/search/ProjectDetails.aspx?PJID=58810&LID=1443" class="">http://www.findaphd.com/search/ProjectDetails.aspx?PJID=58810&LID=1443</a></div>
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<div class="">Subject: PhD Studentship in Computational Biology/Bioinformatics/Artificial Life</div>
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<div class="">Microbe Wars: Exploring the Maintenance of Microbial Diversity Using Artificial Life</div>
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<div class="">A PhD studentship in computational biology is available at the University of St Andrews in Scotland.</div>
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<div class="">Microbes are the most ubiquitous life form on Earth, found everywhere from exotic locations - black smokers on the ocean bottom - to the inside of every human’s gut. They are essential for nearly all life on the planet, driving nutrient cycling
in the environment and contributing to the health of plants and animals. Microbes are also critical to industrial biotechnology, especially for fuel, fine chemical and drug production. Thus, understanding how microbial ecosystems are maintained is essential.
Evolutionary processes within microbial communities appear fundamentally different than those at play in macro-organisms, requiring specific understanding.</div>
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<div class="">In this studentship, you will develop artificial life simulations to explore evolution and maintenance of biodiversity in microbial communities. You will use machine learning and mathematical modelling to identify and assess strategies leading
to stable communities that also maintain biodiversity. You will explore how communities respond to perturbation, corresponding to phenomena such as provision of antibiotics to a patient, and human intervention in industrial and agricultural systems.</div>
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<div class="">Your work will have applications in many areas. It is increasingly clear that the microbial communities within our bodies are key contributors to health: because the beneficial effects of these communities are in danger from both antibiotics and
antibiotic-resistant pathogens, understanding how healthy biodiversity can be maintained in the face of perturbation is essential. Maintenance of soil microbial diversity is important for plant health, and ultimately our food security. Microbial populations
in all contexts may share essential features of community assembly, and this project will inform multiple topic areas. </div>
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<div class="">You will gain training in artificial life simulations, genetic algorithms, machine learning, game theory, microbial genomics and metabolism, and mathematical modelling, and will acquire a working knowledge of microbial communities and their importance
on our planet.</div>
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<div class="">Your project will take place in St Andrews’ Centre for Biology Diversity (CBD) in the School of Biology, and will be jointly supervised by Dr V Anne Smith from the School of Biology, Dr John Mitchell from the School of Chemistry, and Dr Leighton
Pritchard from the James Hutton Institute. All three groups work in complementary areas of computational systems biology and machine learning. For more information on their research please visit:</div>
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<div class="">Dr V Anne Smith’s research pages: <a href="http://biology.st-andrews.ac.uk/vannesmithlab/" class="">
http://biology.st-andrews.ac.uk/vannesmithlab/</a></div>
<div class="">Dr John Mitchell’s research pages: <a href="http://chemistry.st-andrews.ac.uk/staff/jbom/group/" class="">
http://chemistry.st-andrews.ac.uk/staff/jbom/group/</a></div>
<div class="">Dr Leighton Pritchard’s research pages: <a href="http://www.hutton.ac.uk/staff/leighton-pritchard" class="">
http://www.hutton.ac.uk/staff/leighton-pritchard</a></div>
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<div class="">EASTBIO - the BBSRC East of Scotland Bioscience Doctoral Training Partnership - is a partnership between the Universities of Aberdeen, Dundee, Edinburgh and St Andrews; the Scottish Universities Life Sciences Alliance (SULSA); and the Scottish
Universities Physics Alliance (SUPA). A fully funded 4-year EASTBIO PhD studentship (fees and stipend at the standard rate) is available for Autumn 2016 for candidates with a strong academic record and that satisfy BBSRC studentship eligibility requirements
(see <a href="http://www.eastscotbiodtp.ac.uk/how-apply-0" class="">http://www.eastscotbiodtp.ac.uk/how-apply-0</a> if you are unsure - typically UK citizenship required). </div>
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<div class="">If you are interested, please first make an initial informal enquiry, including a covering letter explaining your interest in the studentship and a CV, to
<a href="mailto:anne.smith@st-andrews.ac.uk" class="">anne.smith@st-andrews.ac.uk</a>.</div>
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<div class="">Formal applications should follow to the University following the procedure available at:</div>
<div class=""><a href="http://www.eastscotbiodtp.ac.uk/how-apply-0" class="">http://www.eastscotbiodtp.ac.uk/how-apply-0</a></div>
<div class="">using the forms provided and via the link to St Andrews University.</div>
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<div class="">Complete applications must have been received by the University by 14 December 2015.</div>
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<div class="">On 9 Dec 2015, at 09:45, Bert Overduin <<a href="mailto:Bert.Overduin@ed.ac.uk" class="">Bert.Overduin@ed.ac.uk</a>> wrote:</div>
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<div class="" style="word-wrap:break-word">Forwarding on behalf of a colleague:<br class="">
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<div class=""><font face="Arial" class=""><span lang="EN-US" class="">Bioinformatics PhD Opportunity: University of St Andrews: </span><span class=""><a href="http://www.findaphd.com/search/ProjectDetails.aspx?PJID=67780&LID=1374" target="_blank" class="">http://www.findaphd.com/search/ProjectDetails.aspx?PJID=67780&LID=1374</a></span><span class=""> </span></font></div>
<div class=""><font face="Arial" class="">Bioinformatics PhD Opportunity: University of Dundee: <a href="http://www.findaphd.com/search/ProjectDetails.aspx?PJID=67784&LID=1374" target="_blank" class="">http://www.findaphd.com/search/ProjectDetails.aspx?PJID=67784&LID=1374</a></font></div>
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<div class="">Bert Overduin, PhD</div>
<div class="">TRAINING AND OUTREACH BIOINFORMATICIAN</div>
<div class=""><a href="mailto:Bert.Overduin@ed.ac.uk" target="_blank" class="">Bert.Overduin@ed.ac.uk</a></div>
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<div class="">EDINBURGH GENOMICS</div>
<div class="">The University of Edinburgh</div>
<div class="">Ashworth Laboratories<br class="">
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<div class="">The King's Buildings</div>
<div class="">Charlotte Auerbach Road</div>
<div class="">Edinburgh EH9 3FL</div>
<div class="">Scotland, United Kingdom</div>
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<div class="">tel. +44(0)1316507403</div>
<div class=""><a href="http://genomics.ed.ac.uk/" target="_blank" class="">http://genomics.ed.ac.uk</a></div>
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--<br class="">
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Information and Computing Sciences Group; Weeds, Pests and Diseases Theme<br class="">
DG31, James Hutton Institute (Dundee)<br class="">
Errol Road, Invergowrie, Perth and Kinross, Scotland, DD2 5DA<br class="">
e: <a href="mailto:leighton.pritchard@hutton.ac.uk" class="">leighton.pritchard@hutton.ac.uk</a> w:
<a href="http://www.hutton.ac.uk/staff/leighton-pritchard" class="">http://www.hutton.ac.uk/staff/leighton-pritchard</a><br class="">
gpg/pgp: 0xFEFC205C tel: +44(0)844 928 5428 x8827 or +44(0)1382 568827<br class="">
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