<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Dear all<div class=""><br class=""></div><div class="">Below a urgent call for a post-doc position in France related to ontologies.</div><div class=""><br class=""></div><div class="">cheers</div><div class=""><br class=""></div><div class="">Frederik<br class=""><div><blockquote type="cite" class=""><div class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><br class=""><blockquote type="cite" class=""><div class=""><br class=""></div><div class=""><div class="WordSection1" style="page: WordSection1; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span class="">Dear collaborators,<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">We NEED you to help us found a candidate postdoc for this position. Recently the position has been extended to 18 months (rather than 12) but we need a candidate from outside France by beginning of November or the funding will be lost.<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Please, transfer this email and send me recommendations. This is crucial for AgroPortal and shall be very good for GACS project.<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Clement<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div class=""><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0cm 0cm;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class="">De :</b><span class="Apple-converted-space"> </span><a href="mailto:jonquet=lirmm.fr@rda-groups.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">jonquet=lirmm.fr@rda-groups.org</a><span class="Apple-converted-space"> </span>[<a href="mailto:jonquet=lirmm.fr@rda-groups.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">mailto:jonquet=lirmm.fr@rda-groups.org</a>]<span class="Apple-converted-space"> </span><b class="">De la part de</b><span class="Apple-converted-space"> </span>jonquet<br class=""><b class="">Envoyé :</b><span class="Apple-converted-space"> </span>vendredi 21 juillet 2017 14:40<br class=""><b class="">À :</b><span class="Apple-converted-space"> </span>'Agricultural Data IG (IGAD)' <<a href="mailto:rda-agrdatainterop-ig@rda-groups.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">rda-agrdatainterop-ig@rda-groups.org</a>>;<span class="Apple-converted-space"> </span><a href="mailto:rda-agrisemantics-wg@rda-groups.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">rda-agrisemantics-wg@rda-groups.org</a>;<span class="Apple-converted-space"> </span><a href="mailto:gacs-wg@googlegroups.com" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">gacs-wg@googlegroups.com</a>;<span class="Apple-converted-space"> </span><a href="mailto:agroportal-users@lirmm.fr" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">agroportal-users@lirmm.fr</a>;<span class="Apple-converted-space"> </span><a href="mailto:support@bioontology.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">support@bioontology.org</a>; 'Vocabulary Services Interest Group' <<a href="mailto:vocabulary_services@rda-groups.org" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">vocabulary_services@rda-groups.org</a>><br class=""><b class="">Objet :</b><span class="Apple-converted-space"> </span>[rda-agrdatainterop-ig][vocabulary_services][rda-agrisemantics-wg] TR: Postdoc position on AgroPortal, GACS and ontology alignment in Montpellier, France<o:p class=""></o:p></div></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Hello all,<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Just a quick email to ask you to share the postdoc offer we have in Montpellier to work on AgriSemantics related stuff : AgroPortal, ontology mapping and GACS !<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">It still open. A candidate from this community will be perfect!<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Bye<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Happy summer.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Clement<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">-----------------------------------------------------------<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">The NUMEV Labex (<a href="http://www.lirmm.fr/numev" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.lirmm.fr/numev</a>) and AgroPortal project (</span><a href="http://agroportal.lirmm.fr/" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span lang="EN-US" class="">http://agroportal.lirmm.fr</span></a><span lang="EN-US" class="">) which builds an ontology repository for agronomy are offering a 1-year postdoc position for 2017-2018 in Montpellier, to work on agronomical ontologies and their alignments as well as take part in the international GACS initiative (<a href="http://www.agrisemantics.org/gacs/" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.agrisemantics.org/gacs/</a>).<span class="Apple-converted-space"> </span></span><span lang="EN-US" style="font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""> </span><span lang="EN-US" style="font-size: 12pt; font-family: 'Times New Roman', serif;" class=""><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span lang="EN-US" class="">Abstract:<span class="Apple-converted-space"> </span></span></b><span lang="EN-US" class=""><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Standards vocabularies and ontologies are key elements to achieve data interoperability. The AgroPortal project (<a href="http://agroportal.lirmm.fr/" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://agroportal.lirmm.fr</a>) develops and supports a reference ontology repository for agronomy, plant sciences, biodiversity and nutrition. We have already designed and implemented an advanced prototype offering ontology-based services that hosts 64 ontologies or vocabularies including some reference resources in the domain: Agrovoc, NAL thesaurus, Crop Ontology, etc. One of the challenges when dealing with multiple ontologies is to determine their overlap and align them.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">We are offering a postdoc position to develop ontology mapping capabilities to align AgroPortal ontologies and participate into the international Global Agricultural Concept Scheme (GACS) project. With the experience and technology developed with the YAM++ application (LIRMM’s ontology alignment matcher), we will make AgroPortal a state-of-the-art platform for mapping extraction, generation, validation, evaluation, storage and retrieval by adopting a complete semantic web and linked open data approach and engaging the community for curation. We will first focus on the ontologies of the Montpellier community (agronomy, food, biodiversity) and then join the GACS project (integration of Agrovoc, NALt & CABt) in partnership with RDA AgriSemantics working group.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span lang="EN-US" class="">More detail here</span></b><span lang="EN-US" class="">:<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><a href="http://www.lirmm.fr/sifr/positions/2017_NUMEV-Lingua_postdoc_position.pdf" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.lirmm.fr/sifr/positions/2017_NUMEV-Lingua_postdoc_position.pdf</a><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">or<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><a href="http://www.lirmm.fr/sifr/positions/2017_NUMEV-Lingua_postdoc_position.html" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.lirmm.fr/sifr/positions/2017_NUMEV-Lingua_postdoc_position.html</a><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""> <o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Please, consider transferring the job description in your labs and networks.<o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Best regards<o:p class=""></o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Clement<span class="Apple-converted-space"> </span><o:p class=""></o:p></div><div style="border-style: none none solid; border-bottom-width: 1pt; border-bottom-color: windowtext; padding: 0cm 0cm 1pt;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">Dr.<span class="Apple-converted-space"> </span><b class="">Clement JONQUET</b> - <span class="Apple-converted-space"> </span><i class="">PhD in Informatics - Assistant Professor<br class="">University of Montpellier<o:p class=""></o:p></i></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><i class=""><span lang="EN-US" class="">Coordinator of the<span class="Apple-converted-space"> </span><a href="http://www.lirmm.fr/sifr/" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span style="color: blue;" class="">SIFR</span></a><span class="Apple-converted-space"> </span>and<span class="Apple-converted-space"> </span><a href="http://agroportal.lirmm.fr/" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span style="color: blue;" class="">AgroPortal</span></a><span class="Apple-converted-space"> </span>projects<o:p class=""></o:p></span></i></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><i class=""><span lang="EN-US" class="">Visiting scholar, Stanford University (EU Marie Curie fellow)<o:p class=""></o:p></span></i></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><a href="mailto:jonquet@lirmm.fr" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span style="color: blue;" class="">jonquet@lirmm.fr</span></a><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><a href="http://www.lirmm.fr/~jonquet" style="color: rgb(149, 79, 114); text-decoration: underline;" class=""><span style="color: blue;" class="">http://www.lirmm.fr/~jonquet</span></a><o:p class=""></o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class=""><o:p class=""> </o:p></span></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">@Montpellier : +33/4 67 14 97 43<o:p class=""></o:p></span></div><div style="border-style: none none solid; border-bottom-width: 1pt; border-bottom-color: windowtext; padding: 0cm 0cm 1pt;" class=""><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span lang="EN-US" class="">@Stanford : +1 650 723 6725<b class=""><o:p class=""></o:p></b></span></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div></div></blockquote></div></div></div></blockquote></div><br class=""><div class="">
<div data-mce-style="border-top: 2px solid #3bb6bb; width: 15px; height: 15px; margin: 0px;" style="font-family: arial, helvetica, sans-serif; font-size: 16px; border-top-width: 2px; border-top-style: solid; border-top-color: rgb(59, 182, 187); width: 15px; height: 15px; margin: 0px;" class=""><br class="Apple-interchange-newline"><br class=""></div><div data-mce-style="font-family: corbel, sans-serif; color: #002060;" style="font-size: 16px; font-family: corbel, sans-serif; color: rgb(0, 32, 96);" class=""><b class="">Frederik Coppens</b> - Project leader & IT manager<br class="">Applied Bioinformatics And Biostatistics</div><div data-mce-style="font-family: corbel, sans-serif; color: #002060;" style="font-size: 16px; font-family: corbel, sans-serif; color: rgb(0, 32, 96);" class=""><span style="color: rgb(0, 32, 96); font-family: corbel, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none;" class="">I.T. Support</span><p style="color: rgb(0, 32, 96); font-family: corbel, sans-serif; font-size: 16px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class=""><b class="">VIB-UGent Center for Plant Systems Biology</b><br class="">Ghent University<br class="">Technologiepark 927 - 9052 Ghent - Belgium<br class="">Tel. +32(0)9 331 38 12<br class=""><a class="color: text-decoration: none;cursor: #005A95; pointer;" href="http://www.psb.ugent.be/" target="_blank" data-mce-href="http://www.psb.ugent.be/">www.psb.ugent.be</a></p><br class="Apple-interchange-newline"><span><img apple-inline="yes" id="DCF57C44-FB29-4AFF-A9BE-21AE7322DDB5" src="cid:C3621D1F-D372-4425-93D6-037D9454F0AD@psb.ugent.be" class=""></span>
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