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1st CfP: CMSB 2022, Sep 14-16, Bucharest, Romania
by Ion Petre 18 Jan '22

18 Jan '22

CMSB2022: the 20th International Conference on Computational Methods in Systems Biology University of Bucharest Bucharest, Romania, September 14-16, 2022 Conference website https://fmi.unibuc.ro/en/cmsb-2022/ Submission link https://easychair.org/conferences/?conf=cmsb2022 Abstract registration deadline April 27, 2022 Submission deadline May 4, 2022 CMSB 2022 - First Call for Papers The 20th conference on Computational Methods in Systems Biology (CMSB 2022, https://fmi.unibuc.ro/en/cmsb-2022/) will take place on September 14-16, in Bucharest (Romania), on-site, hybrid, or online, depending on the evolution of the Covid-19 pandemic. CMSB is a well established conference series, whose aim is to bring together researchers from across the biological, mathematical, computational, and physical sciences, interested in the modelling, simulation, analysis, inference, design, and control of biological systems. List of Topics * formalisms for modelling biological processes; * methods and tools for biological system analysis, modelling and simulation; * frameworks for model verification, validation, analysis, and simulation of biological systems; * high-performance methods for computational systems biology; * identification of biological systems; * applications of machine learning and data analytics in biology; * network modelling, analysis, inference; * automated parameter and model synthesis; * model integration and biological databases; * multi-scale modelling and analysis methods; * design, analysis, and verification methods for synthetic biology; * methods for biomolecular computing and engineered molecular devices; * data-based approaches for systems and synthetic biology; * optimality and control of biological systems; * modelling, analysis and control of microbial communities. Committees Program Committee (preliminary, to be completed) * Alessandro Abate<https://www.cs.ox.ac.uk/people/alessandro.abate/> – University of Oxford (UK) * Paolo Ballarini<https://sites.google.com/site/pballarini/> – Centrale Supélec (France) * Daniela Besozzi<https://www.linkedin.com/in/daniela-besozzi-3370868/> – University of Milan Bicocca (Italy) * Luca Cardelli<http://www.lucacardelli.name/> – University of Oxford (UK) * Milan Češka<https://www.fit.vut.cz/person/ceskam/.cs> – Brno University of Technology (Czech Republic) * Eugenio Cinquemani<https://team.inria.fr/ibis/eugenio-cinquemani/> – Inria Grenoble-Rhône-Alpes (France) * Eugen Czeizler<https://www.linkedin.com/in/eugenczeizler/?originalSubdomain=fi> – University of Helsinki (Finland) * Jerome Feret<http://www.di.ens.fr/~feret> – Inria Paris (France) * Clémence Frioux<https://cfrioux.github.io/> – Inria Bordeaux (France) * Ashutosh Gupta<https://www.linkedin.com/in/ashutosh-gupta-3b7a63141/> – IIT Bombay (India) * Monika Heiner<https://www-dssz.informatik.tu-cottbus.de/DSSZ/Main/MonikaHeiner> – Brandenburg Technical University Cottbus-Senftenberg (Germany) * Jane Hillston<http://homepages.inf.ed.ac.uk/jeh> – University of Edinburgh (UK) * Tommaso Mazza<http://bioinformatics.css-mendel.it/> – CSS Mendel (Italy) * Jun Pang<https://satoss.uni.lu/members/jun/> – University of Luxembourg (Luxembourg) * Loïc Paulevé<https://loicpauleve.name/> – CNRS, LaBRI (France) * Andrei Paun<https://www.researchgate.net/profile/Andrei-Paun> – University of Bucharest, Romania, co-chair * Ion Petre<https://users.utu.fi/ionpet/> – University of Turku, Finland, co-chair * Tatjana Petrov<https://www.tatjanapetrov.info/> – University of Konstanz (Germany) * Maria Rodriguez Martinez<https://researcher.watson.ibm.com/researcher/view.php?person=zurich-MRM> – IBM Zürich Research Laboratory (Switzerland) * David Šafránek<https://www.fi.muni.cz/~xsafran1/> – Masaryk University (Czech Republic) * Carolyn Talcott<https://www.sri.com/bios/carolyn-talcott/> – SRI International (USA) * Jing Tang<https://researchportal.helsinki.fi/en/persons/jing-tang> – University of Helsinki (Finland) * Adelinde Uhrmacher<https://mosi.informatik.uni-rostock.de/team/staff/prof-dr-rer-nat-adelinde-…> – University of Rostock (Germany) * Andrea Vandin<http://people.compute.dtu.dk/anvan/> – Technical University of Denmark (Denmark) * Verena Wolf<http://mosi.cs.uni-sb.de/verena.html> – Saarland University (Germany) * Christoph Zechner<https://zechnerlab.wordpress.com/> – Max Planck Institute of Molecular Cell Biology and Genetics (Germany) Organizing committee * David Pacioianu, University of Bucharest, Romania * Andrei Paun<https://www.researchgate.net/profile/Andrei-Paun>, University of Bucharest, Romania (co-chair) * Ion Petre<https://users.utu.fi/ionpet/>, University of Turku, Romania (co-chair) * Nicoleta Siminea, University of Bucharest * Joel Sjöberg, University of Turku, Finland Publication The submissions to CMSB 2022 will be fully peer-reviewed. The accepted articles will be published in the conference proceedings, expected to be in the Springer LNCS/LNBI series and to be indexed by ISI Web of Science, Scopus, ACM Digital Library, DBLP, and Google Scholar. A special issue of a widely recognized international journal is expected to be organized after the conference. A selection of the best papers will be invited to be extended and submitted to this special issue. Important dates * May 4, 2022: regular and tool paper submission * June 10, 2022: acceptance notifications * June 17, 2021: poster abstract submission * September 14-16, 2021: conference Venue The conference will be held in Bucharest (Romania), on-site, hybrid, or online, depending on the evolution of the Covid-19 pandemic. Contact All questions about submissions should be emailed to the conference organizers Ion Petre (ion.petre(a)utu.fi) and Andrei Paun (apaun(a)fmi.unibuc.ro)

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Pathomation is hiring
by Yves Sucaet 18 Jan '22

18 Jan '22

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OLA'2022 deadline approaching
by El-ghazali Talbi 11 Jan '22

11 Jan '22

Apologies for cross-posting. Appreciate if you can distribute this CFP to your network. **************************************************************************************** OLA'2022 International Conference on Optimization and Learning 18-20 July 2022 Syracuse (Sicilia), Italy http://ola2022.sciencesconf.org/ SCOPUS Springer Proceedings **************************************************************************************** OLA is a conference focusing on the future challenges of optimization and learning methods and their applications. The conference OLA'2022 will provide an opportunity to the international research community in optimization and learning to discuss recent research results and to develop new ideas and collaborations in a friendly and relaxed atmosphere. OLA'2022 welcomes presentations that cover any aspects of optimization and learning research such as big optimization and learning, optimization for learning, learning for optimization, optimization and learning under uncertainty, deep learning, new high-impact applications, parameter tuning, 4th industrial revolution, computer vision, hybridization issues, optimization-simulation, meta-modeling, high-performance computing, parallel and distributed optimization and learning, surrogate modeling, multi-objective optimization ... Submission papers: We will accept two different types of submissions: - S1: Extended abstracts of work-in-progress and position papers of a maximum of 3 pages - S2: Original research contributions of a maximum of 10 pages Important dates: =============== Invited session organization Dec 20, 2021 Paper submission deadline Jan 28, 2022 Notification of acceptance March 25, 2022 Proceedings: Accepted papers in categories S1 and S2 will be published in the proceedings. A SCOPUS and DBLP indexed Springer book will be published for accepted long papers. Proceedings will be available at the conference. -- ********************************************************************** OLA'2022 International Conference on Optimization and Learning (SCOPUS, Springer) 18-20 July 2022, Syracuse, Sicilia, Italy http://ola2022.sciencesconf.org *********************************************************************** Prof. El-ghazali TALBI Polytech'Lille, University Lille - INRIA CRISTAL - CNRS

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Lab technician position in SeqBiome
by Claesson, Marcus 10 Jan '22

10 Jan '22

Do you want to work in a dynamic and growing microbiome spin-out company? Do you have experience of DNA extraction, amplification and NGS library preparation and/or equivalent molecular microbiology experience (ideally to at least MSc level)? We are now hiring a Lab Technician, either on a full-time or part-time basis. Please send you CV and a cover letter with references to info(a)seqbiome.com<mailto:info@seqbiome.com> before the 24th Jan. -- Marcus Claesson Chief Executive Officer +353 (0)87 7592733 [cid:image001.jpg@01D7EDB0.A27591C0]<http://www.seqbiome.com/>

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Full tenured Prof in Cancer Bioinformatics (deadline next Monday 10 Jan!)
by Laurent Gatto 07 Jan '22

07 Jan '22

Professor in Cancer Bioinformatics Job ID: 047988. Deadline: 12 noon GMT/7am EST/11am CEST on Monday Jan 10th next The official job description, details and application form are at http://ul.ie/hrvacancies/ I recently moved to UL, and we launched the Limerick Digital Cancer Research Center, which brings together oncology, digital pathology, data science, AI/ML and technological research and the University Hospital. We have a bold vision to develop clinically impactful digital cancer research and broad areas of interest include 3D digital pathology, cancer organoids, tumor-immune, tumor microenvironment, viral cancer biology, integrative analysis of single cell ‘omics data, proteomics, transcriptomics, MS/MS metabolomics, wearable technology data with clinical and other data. It is leveraging UL’s research leadership in software engineering, math, data science, AI/ML, industry 4.0/digital twin technology, real-time in vivo monitoring, biomaterials, nanotechnology, drug-delivery and materials science. UL runs several undergrad, masters and professional degrees in R programming/data science and other software languages, providing students skilled to engage in biostatisticial, computational and bioinformatics research. Candidate should be willing to engage in innovative cutting-edge science across disciplines. Candidates from academic, industry or non-traditional career paths are encouraged. Happy to talk to anyone about the position. Best Aedin -- Aedín C. Culhane, Ph.D. Professor of Cancer Genomics School of Medicine, GEMS3-007 University of Limerick Limerick, V94 T9PX Ireland aedin.culhane(a)ul.ie (she/her/hers) [I work flexible hours across several time zones. I don't expect you to read or respond to my emails outside of your normal working hours]

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*correction* VEP course ATLS
by Lectoraat ATLS-Avans 23 Dec '21

23 Dec '21

Dear Member of BBClist, **CORRECTION** We would like to draw your attention to our upcoming courses that will be organized by the research group analysis techniques in the Life Sciences in 2022: Titel: Variant Effect Prediction Datum: 14 & 17 June 2022 Locatie: Avans Hogeschool, Lovensdijkstraat 61-63, 4818 AJ Breda Prijs: 950 euro Website: http://www.alsavans.nl/uk%20site/Courses/avans-training-2542.html The digital registration form is available on our website. Should you have any questions, please do not hesitate to contact us by email at: info.ATLS(a)avans.nl<mailto:info.ATLS@avans.nl> Kind Regards, Ms. Thaïsa de Leij Research Group Analysis Techniques in Life Science Avans University of Applied Sciences|+31 88 525 7386 | Lovensdijkstraat 61-63 | 4818 AJ Breda | The Netherlands Email: info.ATLS(a)avans.nl<mailto:info.ATLS@avans.nl> | www.avans.nl<http://www.avans.nl/> [avans_university-emailsignature]

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VEP course ATLS
by Lectoraat ATLS-Avans 22 Dec '21

22 Dec '21

Dear Member of BBClist, We would like to draw your attention to our upcoming courses that will be organized by the research group analysis techniques in the Life Sciences in 2022: Titel: Variant Effect Prediction Datum: 19 & 28 april 2022 Locatie: Avans Hogeschool, Lovensdijkstraat 61-63, 4818 AJ Breda Prijs: 950 euro Website: http://www.alsavans.nl/uk%20site/Courses/avans-training-2542.html The digital registration form is available on our website. Should you have any questions, please do not hesitate to contact us by email at: info.ATLS(a)avans.nl<mailto:info.ATLS@avans.nl> Kind Regards, Ms. Thaïsa de Leij Research Group Analysis Techniques in Life Science Avans University of Applied Sciences|+31 88 525 7386 | Lovensdijkstraat 61-63 | 4818 AJ Breda | The Netherlands Email: info.ATLS(a)avans.nl<mailto:info.ATLS@avans.nl> | www.avans.nl<http://www.avans.nl/> [avans_university-emailsignature]

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BSC: Life Sciences vacancy
by BSC Human Resources 20 Dec '21

20 Dec '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Research Engineer Text Mining (RE2). Deadline: 31 January, 2022 Link here <https://www.bsc.es/join-us/job-opportunities/44921lstmre2> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/>

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Postdoctoral position in AI and machine learning
by Dirk VALKENBORG 09 Dec '21

09 Dec '21

Our team is growing! Proud to announce following vacancy: The Data Science Institute and the Center for Statistics are seeking a post-doctoral researcher in artificial intelligence and machine learning. More information can be found at: https://www.uhasselt.be/vacancies_detail?taal=04&vacid=2340&ref=1 Cheers, Dirk Valkenborg

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PhD/postdoc position in machine learning applied to computational biology
by Pieter Libin 09 Dec '21

09 Dec '21

Dear all, The AI lab of the Vrije Universiteit Brussel is looking for a PhD/postdoc in machine learning applied to computational biology, in order to better understand the Brugada syndrome. If interested, please contact prof. Pieter Libin (pieter.libin(a)vub.be<mailto:pieter.libin@vub.be>) and have a look at our website: https://ai.vub.ac.be/job-offers/ Kind regards, prof. dr. Pieter Libin Assistant Professor Artificial Intelligence lab Vrije Universiteit Brussel pieter.libin(a)vub.be<mailto:pieter.libin@vub.be> http://ai.vub.ac.be

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