- BBClist - maillist.psb.ugent.be

PhD and Postdoc positions
by Joana Gonçalves -EWI 10 Jan '20

10 Jan '20

Dear All, We have new vacancies for a PhD candidate and two postdoc positions: * PhD candidate (4-year contract) on learning algorithms for cancer therapeutic target discovery leveraging heterogeneous molecular data and large-scale loss-of-function screens. Opportunity to pursue machine learning challenges such as learning across different domains, and/or delve into topics like causal inference. Application at https://www.academictransfer.com/en/288752/phd-learning-algorithms-for-drug…. * Postdoc positions (2-year contract) in a flagship collaboration between the TU Delft, the Erasmus MC, and the Holland Proton Therapy Center: on single-cell discovery of biomarkers for targeted proton therapy of head and neck cancer. The position at Erasmus MC will have an experimental focus on using single-cell DNA and RNA sequencing and photoselection for phenotypic labeling of DNA repair dynamics to characterize (un)treated tumor cell line and patient samples. The position at the TU Delft is computational and focuses on the modelling of single-cell response to treatment and discovery of molecular and phenotypic biomarkers conferring resistance to therapy. Application at https://convergence.healthandtechnology.nl/square/position/37. The application deadline for the PhD position is 9 February 2020. For the postdoc positions, recruitment will take place until the positions are filled. Please feel free to contact me for additional information, or to send the vacancies around to potentially interested candidates. Kind regards, Joana -- Joana Gonçalves Assistant Professor TU Delft Faculty EEMCS, Dept. Intelligent Systems Van Mourik Broekmanweg 6, 2628 XE Delft Building 28, Office E05.060 http://joanagoncalves.org

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Fwd: [Bioinf] PhD position Bioinformatics and Oncology, at NKI and VU
by Sanne Abeln 03 Jan '20

03 Jan '20

Dear All, Please find below a link to a PhD position in Bioinformatics and Oncology. This PhD position is part of a collaborative project between the NKI and the VU to discover the role of chromosomal breaks in colorectal cancer. Machine learning and sequence analysis techniques will be used to analyse the impact of chromosomal breaks. https://workingat.vu.nl/ad/phd-position-in-bioinformatics-and-oncology/umau… The application deadline is 31 January 2020 Best wishes, Sanne -- Sanne Abeln Associate Professor Bioinformatics - VU University Amsterdam s.abeln(a)vu.nl +31 20 59 87816 www.few.vu.nl/~abeln -- Sanne Abeln Associate Professor Bioinformatics - VU University Amsterdam s.abeln(a)vu.nl +31 20 59 87816 www.few.vu.nl/~abeln

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Postdoctoral Scientist Bioinformatics in Multiple Sclerosis - KU Leuven
by An Goris 23 Dec '19

23 Dec '19

Dear all, Our laboratory is currently recruiting a postdoctoral scientist bioinformatics for research in the field of multiple sclerosis (application by 3 Jan 2020). Please find all details attached, application is through the online KU Leuven application tool, please see: https://www.kuleuven.be/personeel/jobsite/jobs/55487847 For more information, please feel free to contact me. Best wishes, An An Goris, PhD Professor Laboratory for Neuroimmunology KU Leuven Herestraat 49 bus 1022 B-3000 Leuven, Belgium an.goris(a)kuleuven.be<mailto:an.goris@kuleuven.be>; Phone: +32-16-33.07.72. http://gbiomed.kuleuven.be/lni

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PhD position in medical bioinformatics in Brussels
by Wim VRANKEN 20 Dec '19

20 Dec '19

Dear all, Please find attached information about an open Ph.D. position in bioinformatics. Happy holidays! Wim --------------------------------------------------------------------------------------- Prof. Dr. Wim Vranken Tel: +32 (0)2 6291952 (VUB) +32 (0)2 6505943 (IB)2 VUB - Building E, 5th Floor, E5.02, Pleinlaan 2 1050 Brussels, Belgium Structural Biology Brussels/Artificial Intelligence/General Chemistry/Biomedical sciences Research professor - http://bio2byte.be/ ULB-VUB - Interuniversity Institute of Bioinformatics in Brussels (IB)2 Director - http://ibsquare.be/ ---------------------------------------------------------------------------------------

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Job opening for a PhD student in bioinformatics for structural protein modeling
by Geert Vandeweyer 20 Dec '19

20 Dec '19

Dear colleagues, There is a new vacancy for a doctoral researcher in the area of bioinformatics for structural protein modeling. Feel free to send it around. https://www.uantwerpen.be/en/jobs/vacancies/ap/2019bapffbdef339/ Kind regards, Geert -- Geert Vandeweyer, Ph.D. Department of Medical Genetics Cognitive Genetics University of Antwerp Prins Boudewijnlaan 43/6 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer(a)uantwerpen.be<mailto:geert.vandeweyer@uantwerpen.be> https://www.uantwerpen.be/en/rg/cognet/ http://www.linkedin.com/pub/geert-vandeweyer/26/457/726 -- Email Efficiency Disclaimer: I read & answer emails between 8 AM and 9 AM. I'm not availabe on thursdays. For urgent matters during the day, call me. --

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Job opening for a PhD student in bioinformatics for ecosystem monitoring.
by Kris Laukens 20 Dec '19

20 Dec '19

Dear colleagues, there is a new vacancy for a doctoral researcher in the area of bioinformatics for ecosystem monitoring. Feel free to send it around. http://bit.ly/2PHUmUv Kind regards, Kris -- Kris Laukens, PhD Associate professor bioinformatics - biodata mining Adrem data lab Biomedical Informatics Network Antwerpen (biomina) Department of Mathematics and Computer Science University of Antwerp Middelheimlaan 1, G.111 B-2020 Antwerpen, Belgium T +32 (0)3 265 33 10 E kris.laukens(a)uantwerpen.be<mailto:kris.laukens@uantwerpen.be> W www.uantwerpen.be/en/staff/kris-laukens/<http://www.uantwerpen.be/en/staff/kris-laukens/>

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Job opening for postdoc in AI for small molecule structure elucidation
by Kris Laukens 19 Dec '19

19 Dec '19

Dear colleague, we have a new vacancy for a postdoctoral researcher in the area of artificial intelligence for small molecule structure elucidation. Feel free to send it around. https://www.uantwerpen.be/en/jobs/vacancies/ap/2019bapfwetef359/ Kind regards, Kris -- Kris Laukens, PhD Associate professor bioinformatics - biodata mining Adrem data lab Biomedical Informatics Network Antwerpen (biomina) Department of Mathematics and Computer Science University of Antwerp Middelheimlaan 1, G.111 B-2020 Antwerpen, Belgium T +32 (0)3 265 33 10 E kris.laukens(a)uantwerpen.be<mailto:kris.laukens@uantwerpen.be> W www.uantwerpen.be/en/staff/kris-laukens/<http://www.uantwerpen.be/en/staff/kris-laukens/>

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Getting started with Reproducible and Open Research
by Mateusz Kuzak 19 Dec '19

19 Dec '19

Dear all, We are kicking off the eScience Academy 2020 workshops with "Getting started with Reproducible and Open Research." on February 11-12. This workshop provides an overview of the current status in reproducible analysis in order to provide transparency in research. The workshop covers the use of version control, collaboration, literate programming with Jupyter Notebooks and publishing the code in a citable way. Going beyond simple listing and presentations, the workshop focuses on hands-on skill building. Please find more information, the detailed schedule, syllabus and registration link, on the workshop website: https://escience-academy.github.io/2020-02-11-Reproducible-and-Open-Researc… kind regards, Mateusz — Mateusz Kuzak Community Manager | the Netherlands eScience Center e-mail: m.kuzak(a)esciencecenter.nl | Tel. +31 643707254 twitter: @matkuzak | GitHub: mkuzak | skype: mkuzak | zoom orcid: orcid.org/0000-0003-0087-6021 Science Park 140 (Matrix I) 1098 XG Amsterdam, The Netherlands The Netherlands eScience Center is a joint initiative by SURF and NWO www.nlesc.nl | Twitter | LinkedIn | Facebook | YouTube | Newsletter

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Open positions in single-cell transcriptomics in Barcelona
by Mireya Plass Pórtulas 18 Dec '19

18 Dec '19

Dear colleagues, I am starting a new lab at the CMRB (https://www.cmrb.eu/en_index.html) in Barcelona with the focus on studying how post-transcriptional regulation affects cellular differentiation using high-throughput and single-cell transcriptomics methods. Right now, I am hiring two computational PhD students (http://bit.ly/2EE4zel) and an Experimental Research Associate (http://bit.ly/35wKKRJ) to join my lab, although I am interested in recruiting both computational and experimental people at different levels. I would be glad if you could distribute this email though your network and forward it to interested candidates. Best Regards, Mireya Plass -- Mireya Plass, Group Leader Center of Regenerative Medicine in Barcelona (CMR[B]) Hospital Duran i Reynals Gran Via de l'Hospitalet 199, 08908 Hospitalet de Llobregat (Barcelona), Spain Twitter: @miriplass ________________________________ P Abans d'imprimir aquest missatge, si us plau, comprova que és realment necessari. El medi ambient és cosa de tots. La informació continguda en aquest missatge i en qualsevol fitxer adjunt és confidencial, privada i d'ús exclusiu per al destinatari. Si no és la persona a la qual anava dirigida aquesta informació, si us plau, notifiqui immediatament l'enviament erroni al remitent i esborri el missatge. Qualsevol còpia, divulgació, distribució o utilització noautoritzada d'aquest correu electrònic i dels seus adjunts està prohibida en virtut de la legislació vigent. P Antes de imprimir este mensaje, por favor, comprueba que es realmente necesario. El medio ambiente es cosa de todos. La información contenida en este mensaje y en cualquier fichero adjunto es confidencial, privada y de uso exclusivo para el destinatario. Si usted no es la persona a la cual iba dirigida esta información, por favor, notifique inmediatamente el envio erróneo al remitente y borre el mensaje. Cualquier copia, divulgación, distribución o utilización no autorizada de este correo electrónico y de sus adjuntos está prohibida en virtud de la legislación vigente. P Before printing this e-mail, please make certain it is absolutely necessary. The environment is everybody's business. The information included in this e-mail and any attached files is confidential and private. If you are not the intended recipient, please notify the sender and delete this message immediately. Dissemination, forwarding or copying of this e-mail and its associated attachments is strictly prohibited in accordance with current legislation.

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VIB Applied Bioinformatics Conferenence - early bird deadline 20-12-2019
by Alexander Botzki 17 Dec '19

17 Dec '19

Dear all, Our early bird registration deadline to the Applied Bioinformatics Conference is 20th of December – if you like to register have a look at the registration web site very soon 😉 More info at: https://vibvzw.createsend.com/campaigns/reports/viewCampaign.aspx?d=r&c=03D… Best regards, Alex Alexander Botzki VIB Rijvisschestraat 120 - 9052 Ghent - Belgium [MAIL SIGNATURE]<https://vibconferences.be/event/applied-bioinformatics-in-life-sciences-3rd…>

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