This course will introduce computational modeling of large (genome-scale) metabolic reaction networks through a scalable framework known as constraint-based modeling. Emphasis will be on the usage in both biotechnology and systems biomedicine. Main topics will be fundamental constraint-based modeling methods, omics data integration, multi-scale modeling and microbial community modeling. The course will combine theoretical lectures with tutorial exercises and computational exercises in Python.
Where: Wageningen Campus, the Netherlands
When: 13 - 17 February 2023
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This course aims to teach how to:
- Explain Linked Data technologies (Internet, Semantic Web, ontologies, graph databases), standards and recommendations (as URI, XML, RDF, OWL, SPARQL), and their use in forming a Web of Data;
- Use Linked Data technologies for retrieving information in the Semantic Web (i.e. use of SPARQL);
- Use of existing vocabularies for annotating data and endpoints for finding data for a particular domain;
- Understand the FAIR principles and how to apply it to a research project;
- Able to convert research metadata into FAIR Linked Datasets.
Where: Wageningen Campus, the Netherlands
When: 13 - 17 March 2023
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Where: O2 building, Vrije Universiteit Amsterdam
When: Wednesday 15/02/2022 from 9:30 - 18:00
Registration deadline: 1 February 2023!
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