Dear colleagues,
Also in this academic year the BioSB research school, Wageningen University & Reserachand Eindhoven University of Technology will organize the course:
*Integrated Modeling and Optimization*12-16 December 2022, Wageningen UniversityWebsite: https://www.dtls.nl/courses/integrated-modeling-and-optimization-2022/Computational modelling is an absolute requisite to gain understanding ofthe biological mechanisms underlying patterns observed in experimentaldata. However, one could say that modelling is a craftsmanship, that canonly be learned via intense exercising and ‘learning by doing’. In thiscourse we offer the participants the possibility to learn and exercise themodeling process and the optimization techniques needed to fit models todata.
In the course the students will learn:- to understand the common ground and the differences for applicationsof dynamic modeling in metabolic, regulatory, signaling, and multi-scalebiological processes- how to set-up a dynamic model to represent biological networks usingdifferent interaction mechanisms- to implement, simulate and analyze dynamic network models- to understand the wide variety of problems in modelling that can besolved with optimization ·- to apply different types of numerical optimization methods: global andlocal search methods: steepest descent, Levenberg-Marquardt, geneticalgorithms, linear programming.- the combination of dynamic modeling and optimization to integrateexperimental data in modelling, estimate model parameters and designexperiments.- to understand how numerical optimization (linear programming) works influx balance analysis to simulate metabolic network models.Lecturers:· Prof. Natal van Riel, Eindhoven University of Technology (course coordinator)· Dr. Aalt-Jan van Dijk, Wageningen University & Research· Prof. Jaap Molenaar, Wageningen University & Research· Dr. Hans Stigter, Wageningen University & Research· Dr. Robert Smith, Wageningen University & Research· Dr. Dragan Bosnacki, Eindhoven University of TechnologyTarget audience:The course is aimed at PhD students with a background in bioinformatics, systems biology, computer science or a related field,and life sciences. Participants from the private sector are also welcome. A working knowledge of mathematics,especially differential equations, is recommendable, but we will distribute preparation material to be studied by studentsmissing the required background. Furthermore, at the start we offer a math refresher to help those participants whoare not (yet) involved in modelling on a daily basis.
Dr. Celia W.G. van Gelder
Training Programme Manager DTL/ELIXIR-NL/Health-RI
Network Manager TDCC-LSH
tel. +31613375327
e-mail: celia.van.gelder@dtls.nl
websites: https://www.dtls.nl/, https://www.health-ri.nl/, https://www.elixir-europe.org/platforms/training
twitter: celia_vgelder
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