Dear colleagues,
 
Also in this academic year the BioSB research school, Wageningen University & Reserach 
and Eindhoven University of Technology will organize the course:
 
*Integrated Modeling and Optimization*
 
12-16 December 2022, Wageningen University
 
Website: https://www.dtls.nl/courses/integrated-modeling-and-optimization-2022/
 
Computational modelling is an absolute requisite to gain understanding of
the biological mechanisms underlying patterns observed in experimental
data. However, one could say that modelling is a craftsmanship, that can
only be learned via intense exercising and ‘learning by doing’. In this
course we offer the participants the possibility to learn and exercise the
modeling process and the optimization techniques needed to fit models to
data. 
  
In the course the students will learn:
 
   - to understand the common ground and the differences for applications
   of dynamic modeling in metabolic, regulatory, signaling, and multi-scale
   biological processes
   - how to set-up a dynamic model to represent biological networks using
   different interaction mechanisms
   - to implement, simulate and analyze dynamic network models
   - to understand the wide variety of problems in modelling that can be
   solved with optimization ·
   - to apply different types of numerical optimization methods: global and
   local search methods: steepest descent, Levenberg-Marquardt, genetic
   algorithms, linear programming.
   - the combination of dynamic modeling and optimization to integrate
   experimental data in modelling, estimate model parameters and design
   experiments.
   - to understand how numerical optimization (linear programming) works in
   flux balance analysis to simulate metabolic network models.
 
 
Lecturers:
 
·        Prof. Natal van Riel, Eindhoven University of Technology (course coordinator)
·        Dr. Aalt-Jan van Dijk, Wageningen University & Research
·        Prof. Jaap Molenaar, Wageningen University & Research
·        Dr. Hans Stigter, Wageningen University & Research  
·        Dr. Robert Smith, Wageningen University & Research
·        Dr. Dragan Bosnacki, Eindhoven University of Technology
 
 
Target audience:
The course is aimed at PhD students with a background in bioinformatics, systems biology, computer science or a related field,
and life sciences. Participants from the private sector are also welcome. A working knowledge of mathematics,
especially differential equations, is recommendable, but we will distribute preparation material to be studied by students
missing the required background. Furthermore, at the start we offer a math refresher to help those participants who 
are not (yet) involved in modelling on a daily basis.
 
 
 

 




--

Dr. Celia W.G. van Gelder
Training Programme Manager DTL/ELIXIR-NL/Health-RI
Network Manager TDCC-LSH

tel. +31613375327
e-mail: celia.van.gelder@dtls.nl
websites: https://www.dtls.nl/, https://www.health-ri.nl/, https://www.elixir-europe.org/platforms/training
twitter: celia_vgelder


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