IMPORTANT: REGISTRATION DEADLINE EXTENDED UNTIL JUNE 27, 2013!!

Small molecules, gene products and their interaction

Day 1-3: Relevant EBI resources: roadshow by EBI

Day 4-5: Pathway and network approaches: diXa Training & BiGCaT

General information

Date:                 July 1- 5, 2013

Location:            Maastricht School of Management, Maastricht, the Netherlands

Website:             http://www.nbic.nl/education/course-overview/pages3/1/coursedetails/small-molecules-gene-products-and-their-interaction/

Organisers:         Chris Evelo (Maastricht University, www.bigcat.unimaas.nl), Egon Willighagen (Maastricht University), Tom Hancocks (EMBL-EBI), Vera Matser (EMBL-EBI & diXa, www.dixa-fp7.eu), Celia van Gelder (NBIC, www.nbic.nl)

Contact:             Chris Evelo (chris.evelo@maastrichtuniversity.nl), Celia van Gelder (education@nbic.nl)

Registration:       http://www.nbic.nl/education/nbic-phd-school/enrolment/.
The registration deadline is June 27, 2013.  After registration you will receive further information about hotel accommodation.

 

 

Course description

This five day course introduces various databases and data analysis tools to get grips on the big data in the life sciences.

The course consists of two parts, which can be followed both or individually:

Part 1 (day 1-3) introduces the advanced uses of the gene and genomes databases, small molecule resources, the protein sequence databases, and interaction and pathway databases at EBI (a.o. UniPROT, ENSEMBL, CHEMBL, IntAct and Reactome). This first part is an EBI  Roadshow hosted by UM & NBIC.  

The second part (day 4-5) focuses on real data analysis using pathway and network approaches with links to the databases covered in first part.
Tools that will be used include WikiPathways, PathVisio and Cytoscape. Covered aspects include pathway creation, data preparation for analysis, pathway analysis. network analysis and network extension using target information. This second part is provided by the department of Bioinformatics-BiGCaT at Maastricht University in collaboration with the DiXa FP7 project (www.dixa-fp7.eu) on systems biology approaches in toxicogenomics. The DiXa project will provide examples about (re)use and (re)analysis of large genomics datasets.

Teachers
Denise Carvalho-Silva, Louisa Bellis, Sandra Orchard, Chris Evelo, Martina Kutmon, Christoper Hardt, Stathis Kanterakis, Anwesha Dutta, Egon Willighagen.

Target audience
This course is intended for researchers in Life Sciences, Bioinformatics and Systems Biology, Pharmacology, Toxicology.

 

Course Programme
See attached flyer.

Best regards

Celia van Gelder
NBIC Education

  

-- 
Dr. Celia W.G. van Gelder
Coordinator Education CMBI
Projectleader Education NBIC
tel. +31-(0)24-3666120
e-mail: C.vanGelder@cmbi.ru.nl 
websites: www.cmbi.ru.nl, www.nbic.nl

Postal address:
CMBI 260
Radboud University Nijmegen-Medical Centre /NCMLS
PO Box 9101, 6500 HB Nijmegen
The Netherlands