October 2007 - beg-bogas@psb.ugent.be

[Beg-bogas] EuCAP, a Eukaryotic Community Annotation Package
by Thomas Abeel 30 Oct '07

30 Oct '07

Is BOGAS reinventing the wheel? http://www.biomedcentral.com/1471-2164/8/388/abstract

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[Beg-bogas] [Fwd: Ectocarpus Bogas]
by lieven sterck 29 Oct '07

29 Oct '07

-------- Original Message -------- Subject: Ectocarpus Bogas Date: Mon, 29 Oct 2007 17:54:26 +0100 From: Mark COCK <cock(a)sb-roscoff.fr> To: Lieven Sterck <lieven.sterck(a)psb.ugent.be>, Kenny Billiau <kenny.billiau(a)psb.ugent.be> Hi Lieven and Kenny, A few things for the website. - Some of the searches (keywords, etc) don't work yet but presumably this is being done. - Will there be automatic GO annotations? - We have identified several genes as being specifically expressed during different stages of the life cycle. Some of the data corresponding to this is in the Arrayexpress database. It would be nice to include a link to this expression data in the annotation but it is not always easy to go from the partial cDNA clones (which often correspond to 3' untranslated regions) to the gene models. Is there a way of going to a gene model using a position on a sctg? - I have a problem getting Artemini to work on my Mac (although it seems to work fine on another Mac in the office and on PCs). I re-installed Java and Firefox and that seemed to fix things partially but there is still an error message half the time: The stracktrace is printed to the console Message: Parse error at this point 41527), complement (9852..9936)): Parse error after reading "-" Any ideas? Best, Mark -- J. Mark Cock Algal Genetics Group, UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique, Place Georges Teissier, BP74 29682 Roscoff Cedex, France 48° 43' 37.33" N 3° 59' 17.41" W Tel: 33 2 98 29 23 60, Fax: 33 2 98 29 23 85 Email: cock(a)sb-roscoff.fr http://www.sb-roscoff.fr/UMR7139/en/genetics.html -- ============================================================== Lieven Sterck Predoctoral fellow Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be -------------------------------------------------------------- Algal Genetics Group UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique Place Georges Teissier, BP74 29682 Roscoff Cedex, France Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html ==============================================================

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[Beg-bogas] allo
by Steven Robbens 29 Oct '07

29 Oct '07

kroket

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[Beg-bogas] test the mailing list from non PSB SMTP server
by Yao-Cheng Lin 24 Oct '07

24 Oct '07

test mail from Nancy SMTP server. Say Hi from Nancy. Steven and Klaas are probably sitting in the warm and sunny Spain, eating seafood. Best, YC

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[Beg-bogas] [Fwd: Re: cytochrome P450s in Ectocarpus]
by lieven sterck 23 Oct '07

23 Oct '07

is da een prob van buffering van de data stream da hij maar 601Kb krijgt ipv 728??? L. -------- Original Message -------- Subject: Re: cytochrome P450s in Ectocarpus Date: Tue, 23 Oct 2007 10:09:29 -0500 From: David Nelson <drnelson1(a)gmail.com> To: lieven sterck <lieven.sterck(a)psb.ugent.be> References: <d862fa170710201348oba00fb2i5367e7ce2b09e4b(a)mail.gmail.com> <471C6F29.9000504(a)psb.ugent.be> <d862fa170710221017i4ef554c7x3b4840c2cc7ae337(a)mail.gmail.com> <d862fa170710221211g3d88a30fna570812c65112ca4(a)mail.gmail.com> <13689.157.193.202.129.1193094062.squirrel(a)webmail.psb.ugent.be> <d862fa170710221811g6819eed7lbaa4969e338fbca8(a)mail.gmail.com> <d862fa170710230750l60cd4d5fj8b138c24f51a70e8(a)mail.gmail.com> <471E0AEC.2080305(a)psb.ugent.be> Dear Lieven, Thanks so much. I doubt most of these P450s will have ESTs, but it would sure make my life easier. I noticed a problem in recovering your sequences from the blast pages. When I clicked on the F next to the sequence name I got a display of the nucleotide sequence. There was a button that said save as FASTA. When I did this and opened the file on my computer it was missing quite a lot of sequence. Of the contig_63 that was 728,000 bp I only got 601,000 bp. However, if I selected the sequence off the display page and pasted into a Word document I got all 728,000bp. So there is some problem with the save as FASTA command. You might want to do a couple of checks. David On 10/23/07, *lieven sterck* <lieven.sterck(a)psb.ugent.be <mailto:lieven.sterck@psb.ugent.be>> wrote: Hi David, I just received the cleaned ESTs a couple of days ago. I will make this set also available on the blast page. regards, lieven David Nelson wrote: > Dear Lieven, > > How can I Blast ESTs for Ectocarpus? > > David > > On 10/22/07, *David Nelson* <drnelson1(a)gmail.com > <mailto:drnelson1@gmail.com>> wrote: > > Dear Lieven, > > Thanks for the tip. I had been clicking on the name next to > the F. I thought they were both the same, I did not try the > F. It worked. > > > David > > On 10/22/07, * Lieven Sterck* <lieven.sterck(a)psb.ugent.be > <mailto:lieven.sterck@psb.ugent.be>> wrote: > > Hi David, > > I could send you the scaffolds. > But you should be able to extract them yourself: on the > blast result page > click on the 'F' left of the sequence name (next to the > '>' sign) this > will lead you to the actual sequence of the hit. > > I will get you an invitation to the annotation site first > thing in the > morning. > > don't hesitate to contact me if something is unclear!! > regards, > lieven > > > > Dear Lieven, > > > > There are only 10 contigs with P450 sequences. > > Some are pretty short weak matches and may be accidental. > >> F sctg_6 CYP51C1 > >> F sctg_63 CYP97E3 and CYP97E4 > >> F sctg_25 CYP97F-like seq > >> F sctg_362 most like CYP5021A1 > >> F sctg_1 bacterial chromosome with 14 P450s, all assembled > >> F sctg_10 C-helix and I-helix parts > >> F sctg_471 2 sequences only partially assembled > >> F sctg_60 2 sequences only have the PERF motif (accidental?) > >> F sctg_193 only the I-helix motif > >> F sctg_81 poor match may be accidental (heme signature > region) > > > > The current version of the blast server will not return > any DNA sequence > > to > > me. I am not given permission to see the genome yet, so > could you please > > send me 9 of the contigs above so I can continue to > assemble these P450 > > genes. I do not need the sctg_1 since I have already > completed those 14 > > bacterial P450s. > > > > If the files are too large, > > I only need the parts of them shown below > > > >> F sctg_6 1,170,000-1,200,000 > >> F sctg_10 780,000-820,000 > >> F sctg_25 950,000-970,000 > >> F sctg_60 400,000-460,000 > >> F sctg_63 330,000-370,000 > >> F sctg_81 170,000-220,000 > >> F sctg_193 150,000-200,000 > >> F sctg_362 70,000-90,000 > >> F sctg_471 30,000-80,000 > > > > Thanks. > > > > David Nelson > > > > > > On 10/22/07, David Nelson <drnelson1(a)gmail.com > <mailto:drnelson1@gmail.com>> wrote: > >> > >> Dear All, > >> > >> Can you make the pull down choices for the expect value > in the blast > >> server go up to 100 rather than stopping at 10? This > may be helpful for > >> finding distantly related exons. > >> > >> David > >> > >> On 10/22/07, lieven sterck <lieven.sterck(a)psb.ugent.be > <mailto:lieven.sterck@psb.ugent.be>> wrote: > >> > > >> > Hi David, > >> > > >> > That's correct! Scaffold sctg_1 is indeed from a > bacterial symbiont > >> > found associated with (or within) ectocarpus. > >> > There are some more scaffolds from this organism, a list: > >> > sctg_1 > >> > sctg_1222 > >> > sctg_1301 > >> > sctg_1320 > >> > sctg_1403 > >> > sctg_1415 > >> > sctg_1432 > >> > sctg_1769 > >> > sctg_1876 > >> > sctg_397 > >> > sctg_627 > >> > sctg_822 > >> > sctg_853 > >> > sctg_870 > >> > sctg_886 > >> > sctg_893 > >> > > >> > these scaffolds have recently been removed from the > official assembly. > >> > GenoScope (responsible for the sequencing) is > finishing and analyzing > >> > this bacterial symbiont. > >> > > >> > best regards, > >> > lieven > >> > > >> > > >> > David Nelson wrote: > >> > > >> > Dear all, > >> > > >> > I have begun looking over the P450s in Ectocarpus. > >> > The biggest surprise was sctg_1 which had 14 P450s but > they seem to be > >> > bacterial. > >> > > >> > Here are the 14 P450s with their best matches. I > compared them to > >> 3305 > >> > bacterial sequences from the Global Ocean Sequencing > Project at the J > >> Craig > >> > Venter Institute. Some were a better match to those > seawater > >> sequences than > >> > to named P450s. > >> > > >> > Since the whole contig of 3.4 Mb seems to be bacterial > and often like > >> > Caulobacter, I searched Genbank for a rRNA from > Caulobacter. I found > >> one > >> > from a > >> > > >> > Caulobacter endosymbiont of Tetranychus urticae > >> > AY753176 > >> > ribosomal RNA gene, partial sequence. > >> > > >> > I used this for a blastn search of Ectocarpus. > >> > I found a 90% match on the same contig as the 14 P450s > (see below) > >> > There is a Caulobacter-like endosymbiont or > contaminant in the algae > >> > genome data. > >> > > >> > I blasted the Ectocarpus bacterial rRNA seq against > Genbank and found > >> > a Sargasso Sea bacterioplankton as the best match > >> > > >> > >F sctg_1 > >> > 3017346 aaagatttatcgcccctggatgggcccgcgt > tggattagctagttggtggggtaatggcc > >> > 3017405 > >> > 3017406 > taccaaggcgacgatccatagctggtctgagaggatgatcagccacactggaactgagac > >> > 3017465 > >> > 3017466 > acggtccagactcctacgggaggcagcagtggggaatattggacaatgggcgcaagcctg > >> > 3017525 > >> > 3017526 > atccagccatgccgcgtgagtgatgaaggccctagggttgtaaaactctttcagtggtga > >> > 3017585 > >> > 3017586 > agataatgacggtaaccacagaagaagctccggctaactccgtgccagcagccgcggtaa > >> > 3017645 > >> > 3017646 > tacggagggagctagcgttgttcggaattactgggcgtaaagcgcacgtaggcggtctat > >> > 3017705 > >> > 3017706 aaagttgggggtgaaatcccggagctcaactccggaactgcct > 3017748 > >> > > >> > only 6 nucleotide diffs to > >> > >gb|AY162106.1| Alpha proteobacterium GMD21A06 small > subunit > >> ribosomal > >> > RNA gene, > >> > partial sequence > >> > Length=1326 > >> > > >> > isolation_source="Sargasso Sea bacterioplankton > >> > > >> > Score = 710 bits (384), Expect = 0.0 > >> > Identities = 397/403 (98%), Gaps = 1/403 (0%) > >> > Strand=Plus/Plus > >> > > >> > Query 1 > >> > > AAAGATTTATCGCCCCTGGATGGGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAATGGCC 60 > > >> > > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| > >> > Sbjct 174 > >> > > AAAGATTTATCGCCCCTGGATGGGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAATGGCC 233 > >> > > >> > Query 61 > >> > > TACCAAGGCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGAACTGAGAC 120 > >> > > ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| > >> ||| > >> > Sbjct 234 > >> > > TACCAAGGCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGTGAC 293 > >> > > >> > Query 121 > >> > > ACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTG 180 > >> > |||| > ||||||||||||||||||||||||||||||||||||||||||||||||||| > >> ||| > >> > Sbjct 294 > >> > > ACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAG-CTG 352 > >> > > >> > Query 181 > >> > > ATCCAGCCATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAACTCTTTCAGTGGTGA 240 > > >> > |||||||||||||||||||||||||||||||||||||||||||| > >> ||||||||||||||| > >> > Sbjct 353 > >> > > ATCCAGCCATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCAGTGGTGA 412 > >> > > >> > Query 241 > >> > > AGATAATGACGGTAACCACAGAAGAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAA 300 > >> > > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| > >> > Sbjct 413 > >> > > AGATAATGACGGTAACCACAGAAGAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAA 472 > >> > > >> > Query 301 > >> > > TACGGAGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGTCTAT 360 > >> > ||||||||||||||||||||||||||||||||||||||||||||| > >> |||||||||||||| > >> > Sbjct 473 > >> > > TACGGAGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGTCTAT 532 > >> > > >> > > Query 361 AAAGTTGGGGGTGAAATCCCGGAGCTCAACTCCGGAACTGCCT 403 > >> > ||||||||||||||||||||||||||||||||||||||||||| > >> > > Sbjct 533 AAAGTTGGGGGTGAAATCCCGGAGCTCAACTCCGGAACTGCCT 575 > >> > > >> > > >> > > F sctg_1 (14 P450s from a bacterial genome in the > Ectocarpus data) > >> > Length = 3415905 > >> > > >> > >67% to CYP108B1 Caulobacter crescentus AE005918 > >> > 158936 > FAKLRKDTPLGVAGPQGFEPFWVVTKHKDIVEVERNNEVFHNGDKSTTLVDANTDTA > >> 158766 > >> > 158765 > VREMMGGSPHLIRSLVQMDNPDHKNYRGITAANFMPQELKALEVQVRKIAKSFVDHMEEL > >> > 158586 > >> > 158585 > GRKNDGRCDFAKDVAFLYPLHVIMELLGVPQSDEPKMLKLTQELFGAADPELNRTGKE > >> 158412 > >> > > >> > 158411 > RDDPKEALAALSGTVAEFVEYFTAVTEDRRKTPRADIASVIANGKVNGEAIGIFEAMGYY > >> > 158232 > >> > 158231 > IIVATAGHDTTSGTTAGTMWELAKDRQKFLQVKNDPKLIPLLVEESIRWVTPVKHFMRSA > >> > 158052 > >> > 158051 > TQDTVLGGQEIKKGDWMMLCYQSGNRDEDVFDDPFEFKVNRQPNRHIAFGHGAHVCLGQH > >> > 157872 > >> > 157871 LARMEMRALWEELLPRLDSVELDGEPTRMLANFVCGPKSVPIK 157743 > >> > > >> > >59% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 1458133 > LFERLRNEDPVHFFEHEEFGRFWSVTRHADIMSIDTNHQQFSSEPSIFLGNTNSDEDENF > >> > 1458312 > >> > 1458313 > NPATFIAMDPPKHDAQRNAVNPAVAPPALRDLEPLIRQRVSAVLDSLPIGETFNWVDLVS > >> > 1458492 > >> > 1458493 > IEITTQMLATLFDFPFEDRYMLTRWSDMTTANPETLAAMGLTIEDRRNAMYECLEIFG > >> > 1458666 > >> > 1458667 > GLYAERAQLPPANDFISLMAHNEDMKNLDPMNLLGNLVLLIVGGNDTTRNSMSGGVLAL > >> > 1458843 > >> > 1458844 > HENPAEFAKLKADPSIIPNMVSEIIRWQTPLAYMRRTANEDLEFRGKQIKQGDRIMMWYV > >> > 1459023 > >> > 1459024 > SGNRDERAIERPNEFLIDRENARRHLSFGFGIHRCMGNRVGEMQVRILWEEILKRFDRVE > >> > 1459203 > >> > 1459204 VVGKPARTLSNFVMGFTELPVRL 1459272 > >> > > >> > >50% to CYP108B1 Caulobacter crescentus AE005918 > >> > 1535639 > IFTTLRQDNPLACVEVPGYDPHWMVTKYSDVKEITRQDNLFHSGDRPKILHSQAGEA > >> > 1535809 > >> > 1535810 > LARSFTGGSPNLFQSLVQLDPPEHTAYRNVLQGEFMPGGIAKMKENVAKTAQEFVDQMAS > >> > 1535989 > >> > 1535990 > LAPTCDFADDVAMNYPLQVVLDIVGVPREHHPKMLQLTQWLFSYADPDLKRPGSDIT > >> > 1536160 > >> > 1536161 > DPEEIIKTWNVVFTQFHEFFMPLVEARRANPKEDIASLIANAKINGESMEERKMISYFG > >> > 1536337 > >> > 1536338 > ILATAGHDTTSATTALGMKMLAENPDMLARLKEKPDLIPSFVEECIRWGSPVQHFIRSAT > >> > 1536517 > >> > 1536518 > EDYVLRGQTIRKGDLLYISYLSANRDEEEFDDPFTFKMDRAPNRHVGFGFGGHVCLGQH > >> > 1536694 > >> > 1536695 LARLEIRTIWQTLLPRLTEVELTGPVKFTESEFVCGPKSVPIR > 1536823 > >> > > >> > >41% to CYP107AA1 Bradyrhizobium japonicum USDA 110 > GenPept BAC51802 > >> > 56% to seawater bacterial sequence JCVI_PEP_1096696260773 > >> > 2052084 > PYPAMNQLREKDPVNETPVGPWRISRHADVVDVFRNAPTSQTLADGSSPNMDDQDRRGS > >> > 2052260 > >> > 2052261 > FRDFMLNMDGPEHARLRRLVLGAFTPKALKHIEGEIDRVVDEAMHTALKQGGMEVVEDFA > >> > 2052440 > >> > 2052441 > LRIPSRMICRIMGLPEEDIDQFTVWTAARTNAFFARFLPEDVVEHTRQAGEQMAD > >> 2052605 > >> > 2052606 > YFEAQIKLRRANPREDLLTNLIQSEEKGDRLGDVELAIQAIGLLIAGFETTIGLIGNGTK > >> > 2052785 > >> > 2052786 > ALIENPDQAELLKQNPDLAKNTVEECLRYDTPVLFNWRVLTEPYEVGGKTLPENAVLWMM > >> > 2052965 > >> > 2052966 > LGAANHDPRVHDDPDTMDITRQGISHASFGGGAHTCLGNQLARMEASRAFHAFVS > >> 2053130 > >> > > >> > >JCVI_PEP_1096696260773 > /source_dna_id=JCVI_ORF_1096696260772 > >> > /offset=0 > >> > /translation_table=11 /length=353 > /full_length=353 > >> > Length = 353 > >> > > >> > Score = 956 (336.5 bits), Expect = 3.3e-98, P = 3.3e-98 > >> > Identities = 183/326 (56%), Positives = 227/326 (69%) > >> > > >> > Query: 1 > >> > > PYPAMNQLREKDPVNETPVGPWRISRHADVVDVFRNAPTSQTLADGSSPNMDDQDRRGSF > 60 > >> > PYP + LRE DPVN TPVG WRISR+ DV VF +APTS > T G SPN D D > >> > +GSF > >> > Sbjct: 28 > >> > > PYPKLAHLRENDPVNLTPVGTWRISRYEDVKAVFNDAPTSMTDKLGDSPNFDPLDTKGSF > 87 > >> > > >> > Query: 61 > >> > > RDFMLNMDGPEHARLRRLVLGAFTPKALKHIEGEIDRVVDEAMHTALKQGGMEVVEDFAL > 120 > >> > +F+LN DG H RLR LV +F K ++ +E E+ + > V A A GGM+VV > >> A > >> > > >> > Sbjct: 88 > >> > > LEFVLNKDGDAHRRLRMLVQKSFGQKTVRLMEEEVAKTVAAAFDKAQADGGMDVVPALAH > 147 > >> > > >> > Query: 121 > >> > > RIPSRMICRIMGLPEEDIDQFTVWTAARTNAFFARFLPEDVVEHTRQAGEQMADYFEAQI > 180 > >> > +PSRMIC+IMG+P +D F WTAARTNAFFA+FLP DV > E TR AG M DYF > >> A > >> > I > >> > Sbjct: 148 > >> > > EVPSRMICQIMGVPMQDRQIFNEWTAARTNAFFAKFLPPDVQERTRNAGAAMEDYFRALI > 207 > >> > > >> > Query: 181 > >> > > KLRRANPREDLLTNLIQSEEKGDRLGDVELAIQAIGLLIAGFETTIGLIGNGTKALIENP > 240 > >> > R+ + +DLL+++I + E GD+ D EL > IQAIG+++AG+ETTIGL+GNGT+A > >> > +E+P > >> > Sbjct: 208 > >> > > AERKRDLGDDLLSSMIMASEGGDKFTDDELIIQAIGVIVAGYETTIGLLGNGTRAFVEHP > 267 > >> > > >> > Query: 241 > >> > > DQAELLKQNPDLAKNTVEECLRYDTPVLFNWRVLTEPYEVGGKTLPENAVLWMMLGAANH > 300 > >> > DQ L+ NP+L N +ECLRYDTP+LFNWRVL EPYE+ > G TLP AV+W > >> +LGAAN > >> > > >> > Sbjct: 268 > >> > > DQLAKLRNNPELVSNATDECLRYDTPILFNWRVLEEPYELSGVTLPAEAVIWQLLGAANR > 327 > >> > > >> > Query: 301 DPRVHDDPDTMDITRQGISHASFGGG 326 > >> > DP DPD DI R+ ++H SFGGG > >> > Sbjct: 328 DPARFADPDQFDIEREDVAHQSFGGG 353 > >> > > >> > >37% to CYP107L2 SAV1987 AP005029 Streptomyces avermitilis > >> > 2103582 > DLHSYAFESNPEPTLAWLREHDPVHWSQHGYWFVTRYEDVRAVLGDPARFSSQKAGFGA > >> > 2103406 > >> > 2103405 > NNPIGKDAKGPEGKSGKKASDAEKTMSKGLALSFNQQDPPDHSRVRKLVNQAFSRREISE > >> > 2103226 > >> > 2103225 > RADKIQAVVDALMADVKAKGEFDLITDFAFHLPIIVASDIIGIPAEDRDLFRRNFELAA > >> > 2103049 > >> > 2103048 > RLMAPKRSDEEWAEALTGAKWQSTYMGELIASRAREPRADLISALIQTSEDDQKLT > >> 2102881 > >> > > >> > 2102880 > GGEVASAIMTIFTAAGTTTERMISSGAFLLLTHPEQLAALRADHSLMDNVLEEILRFHHP > >> > 2102701 > >> > 2102700 > NQSTSTNRRATQDVELGGKTIRAGDTVRVSLGSANRDAAQFDEPDAFNIQRTGTKHMSFG > >> > 2102521 > >> > 2102520 FGIHFCLGSALARYETKAALEALL 2102449 > >> > > >> > >57% to CYP153A2 Caulobacter crescentus at C-term > >> > 70% to seawater bacterial sequence JCVI_PEP_1096681995831 > >> > 2416172 > MTTANQTSPNGAIDVNDIPLAELDVSQPHLFKNDTWRPWFARLRAEAPVHYLADSENG > >> > 2416345 > >> > 2416346 > PFWSVTSHDMTKAVDANHKVFSSEEGGIAIVDPQPLDGEQLMRDPSFISMDEPKHATQRK > >> > 2416525 > >> > 2416526 > AVSPAVAPKNLAELEPLIRERAADILDNLPVGETFNWVDRVSVELTARMLATLFDFPYER > >> > 2416705 > >> > 2416706 > RRDLIRWSDVATAVPKVTGEANDMGARRDALIECATTFYQLWQERAAQPPKFDFVSM > >> > 2416876 > >> > 2416877 > LAHGEATKHLSEDPLLMLGNIILLIVGGNDTTRNSISGGVVALNQYPEEYQKLRDTPAL > >> > 2417053 > >> > 2417054 > IPNMVAETVRWQTPVIHMRRTALEDVELGGKTIRKGDKVVMWYLSGNRDEAVFPDADRLI > >> > 2417233 > >> > 2417234 > IDRPNARQHVSFGFGVHRCMGNRLAEMQLRVLWEEIMKRFHTVEVVGEVERLSNNFI > >> > 2417404 > >> > 2417405 RGIASVPVRL 2417434 > >> > > >> > >JCVI_PEP_1096681995831 > /source_dna_id=JCVI_ORF_1096681995830 > >> > /offset=0 > >> > /translation_table=11 /length=418 > /full_length=418 > >> > Length = 418 > >> > > >> > Score = 1567 (551.6 bits), Expect = 5.9e-163, P = > 5.9e-163 > >> > Identities = 290/409 (70%), Positives = 346/409 (84%) > >> > > >> > Query: 13 > >> > > IDVNDIPLAELDVSQPHLFKNDTWRPWFARLRAEAPVHYLADSENGPFWSVTSHDMTKAV > 72 > >> > ID + PL ELDVS P ++NDTWRP FARLR > EAPVHYL+DS NGPFWSVTSH + > >> K > >> > V > >> > Sbjct: 7 > >> > > IDNSSGPLRELDVSLPEHYENDTWRPMFARLRKEAPVHYLSDSVNGPFWSVTSHALIKEV > 66 > >> > > >> > Query: 73 > >> > > DANHKVFSSEEGGIAIVDPQPLDGEQLMRDPSFISMDEPKHATQRKAVSPAVAPKNLAEL > 132 > >> > DAN+ +FSSE+GGI+IVD > +P++G+ ++ +FI+MDEP+H+ QR AV+P+VAPKNL > >> > EL > >> > Sbjct: 67 > >> > > DANNSIFSSEKGGISIVDLKPVEGQ--VQGKNFIAMDEPEHSIQRSAVAPSVAPKNLVEL > 124 > >> > > >> > Query: 133 > >> > > EPLIRERAADILDNLPVGETFNWVDRVSVELTARMLATLFDFPYERRRDLIRWSDVATAV > 192 > >> > EPLIRERA DIL+NLPVGETFNWV VS+ELTARML T+ > DFPY++R > >> L++WSD+AT > >> > V > >> > Sbjct: 125 > >> > > EPLIRERAVDILENLPVGETFNWVQEVSIELTARMLTTILDFPYDQRHKLVQWSDLATDV > 184 > >> > > >> > Query: 193 > >> > > PKVTG-EANDMGARRDALIECATTFYQLWQERAAQPPKFDFVSMLAHGEATKHLSEDPLL > 251 > >> > P+VTG E DM AR D L+ CA FYQLW ++ QPP FD > +SML + T ++ED > >> > L > >> > Sbjct: 185 > >> > > PQVTGKEGTDMQARYDELMNCAAAFYQLWVSKSGQPPSFDLISMLQNNPDTARMNEDMEL > 244 > >> > > >> > Query: 252 > >> > > MLGNIILLIVGGNDTTRNSISGGVVALNQYPEEYQKLRDTPALIPNMVAETVRWQTPVIH > 311 > >> > LGN++LLIVGGNDTTRNSISGGV+ALNQYP+EYQKLRD > PALIPNMV+E > >> > +RWQTPVIH > >> > Sbjct: 245 > >> > > FLGNMLLLIVGGNDTTRNSISGGVMALNQYPDEYQKLRDNPALIPNMVSEIIRWQTPVIH > 304 > >> > > >> > Query: 312 > >> > > MRRTALEDVELGGKTIRKGDKVVMWYLSGNRDEAVFPDADRLIIDRPNARQHVSFGFGVH > 371 > >> > MRRTALED ELGG+ I+KG+KV+MWYLSGNRDE+VF D > DRLIIDRPNAR > >> > HV+FGFGVH > >> > Sbjct: 305 > >> > > MRRTALEDYELGGQHIKKGEKVIMWYLSGNRDESVFEDPDRLIIDRPNARSHVAFGFGVH > 364 > >> > > >> > Query: 372 > RCMGNRLAEMQLRVLWEEIMKRFHTVEVVGEVERLSNNFIRGIASVPVRL 421 > >> > RCMGNR+AE+QLRVLWEEIM+RFHT+EVVG++ RL > NNFIRGI VPVR+ > >> > Sbjct: 365 > RCMGNRMAELQLRVLWEEIMERFHTIEVVGDITRLPNNFIRGIKEVPVRV 414 > >> > > >> > >58% to CYP153B4 Rhodopseudomonas palustris > NZ_AAAF01000001 gene = > >> > Rpal2887 > >> > 2455381 > FPIFEKMRAEEPVHYCAESTYGPYWSVTRYEDIMAVDTNHQVYSSEADFGGIVID > >> 2455217 > >> > 2455216 > DRIAIDPETNYKSASFISMDQPKHDDQRKSVNGITNPNNLQYFGDIIRTRTVNMLDSLPV > >> > 2455037 > >> > 2455036 > GEEFDWVPTVSIELTTQMLATLFDFPFEDRHKLTRWSDVITAEPESDIVENQE 2454878 > >> > 2454877 > ARVAELNEMAEYFVELQKGRINKPDSIDLLTMMTHSPAMAKMPPEEFMGNLALLIVGGN > >> > 2454701 > >> > 2454700 > DTTRNSMSGSIFGMHLFPDEFKKMVDDPSLTDNAVAEIIRWQTPLSHMRRTALQDAVL > >> > 2454527 > >> > 2454526 > GGKQIRKGDKVVMWYASGNRDTSIFDDPDKIIIDRKNARRHLSFGFGIHRCMGNRIGELQ > >> > 2454347 > >> > 2454346 LRILWEEILKRFSRVEVTGEPVLTHSNFVKGYASLPVKL 2454230 > >> > > >> > >59% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 2456653 > FPIFEQMRQEDPVHYCAESTYGPYWSVTRYEDIMAVDTNHHVYSSDAHLGGIIID > >> 2456489 > >> > 2456488 > DGIQNDPENDFKAVNFIAMDKPKHDEQRKSVNGITNPNNLQHFGEIIRKRTSNLLDSLPV > >> > 2456309 > >> > 2456308 > GEEFDWVSTVSIELTTQMLATMFDFPFEDRHKLTRWSDVSTAEPGSGIVETQQQRI > >> 2456141 > >> > 2456140 > DELMEMAAYFSDLQQSRKDKPDNIDLLTMMTHSPAMANMPPEEFLGNLSLLIVGGNDTT > >> > 2455964 > >> > 2455963 > RNSMTGGVFGFSLFPEQWDKMVADPTLIDNAVAEIIRWQTPLAHMRRTALEDAILGG > >> > 2455793 > >> > 2455792 > KQIRKGDKVVMWYASGNRDTSIFDDPDKIIIDRKNARRHLSFGFGIHRCMGNRIGELQLR > >> > 2455613 > >> > 2455612 ILWEEVLKRFSRIEVTGEPELTNSNFVKGYTSLPVKL 2455502 > >> > > >> > >68% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 2728456 > PYFERLRKEAPVHKAYSPDFGEYWSVTRYEDIMAVDTNHHVFSSSWEHGGITLFDQISDF > >> > 2728635 > >> > 2728636 > QLPMFIAMDPPKHDQQRITVQPIVAPNNLKNWEGLIRERTGQILDSLPRGEVFDWVDNVS > >> > 2728815 > >> > 2728816 > VELTTMMLATLFDFPFEQRRKLTRWSDVATGRNNPEIVADDDQWRAELLECLEAFT > >> 2728983 > >> > 2728984 > DIWNERINSDTPGNDLITMLTRGESTKNMDPMEYLGNIILLIVGGNDTTRNSMTASVYA > >> > 2729160 > >> > 2729161 > LNKFAGEYDKLLAKPDLIPNLSSEIIRWQTPLAHMRRTALEDIVLNGAHIKKGDKVAMWY > >> > 2729340 > >> > 2729341 > VSGNRDESVFEDADKVIIDRPNARRQMSFGYGIHRCVGNRLGELQIKILWEEILKRFPKI > >> > 2729520 > >> > 2729521 EVMEEPTRTKSVFVKGYTYMPVRI 2729592 > >> > > >> > >71% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 2729740 > MPLEDINVADGALFQDDAIWPYFERLRKEAPVHKGHSDEFGDYWSVTRYEDIMAVDTNHH > >> > 2729919 > >> > 2729920 > VFSSEGAITLADPLEDFRAPMFIAMDPPKHDKQRITVQPIVAPKNLQNWEGLIRERTGLI > >> > 2730099 > >> > 2730100 > LDQLPRNETFDWVDKVSIELTTMMLATLFDFPFEERRRLTRWSDVATGRDNPEIYK > >> 2730267 > >> > 2730268 > SEEQWRGELMECLEAFTGLWNDRVNSDTPGNDLISMLASGESTKNMDPMEYLGNIILLI > >> > 2730444 > >> > 2730445 > VGGNDTTRNSMTGSVYALNKFAGEYDKLIADPSLIPNLSSEIIRWQTPLAHMRRTALEDI > >> > 2730624 > >> > 2730625 > ELNGQMIKKGDKVAMWYVSGNRDTAVFENADDVIIDRPNARRQMSFGYGIHRCVGNRLGE > >> > 2730804 > >> > 2730805 LQIKILWEELLKRFPKIEVMEEPTRTRSPFVKGYTYMPVRI 2730927 > >> > > >> > >68% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 2731076 > MPLNEINPARRDLFQNDVIWPYFERLRKEAPVHKAYDEDFGEYWSVTRYEDIMAVDTNHH > >> > 2731255 > >> > 2731256 > VFSSDWTNGGITLFDAAEDFRLPMFIAMDPPKHDQQRITVQPIVAPNNLKNWEGLIRERT > >> > 2731435 > >> > 2731436 > AYVLDSLPRGETFDWVDNVSIELTTMMLATLFDFPFEERRKLTFWSDMVTTDPKT > >> 2731600 > >> > 2731601 > LEGGVEEKRGHLLACLEYFTGLWNERINSDTPGNDLITMLTRGESTKNMDPMEYLGNI > >> > 2731774 > >> > 2731775 > ILLIVGGNDTTRNSMTASVYGLNKFPGEYDKLIADPSLIPNLSSEIIRWQTPLAHMRRTA > >> > 2731954 > >> > 2731955 > LEDIELNGTMIKKGDKVAMWYVSGNRDADVFENADDIIIDRPNARRQMSFGYGIHRCVGN > >> > 2732134 > >> > 2732135 RLGELQIKILWEEILKRFPKIELMEEPTRTPGCFVKGYTYMPVRI > 2732269 > >> > > >> > >68% to CYP153A2 Caulobacter crescentus CB15 GenPept > AAK22050 > >> > 2732420 > MPLNEFNPAQRDLFQNDVIWPYFERLREEAPVHKCFDEEFGEYWSVSSYEHIMAVDTNHQ > >> > 2732599 > >> > 2732600 > VFSSSWEHGGITLFDGPEDFQLPMFIAMDQPKHDEQRKTVQPIVAPNNLKSWEPLIRERT > >> > 2732779 > >> > 2732780 > GMVLDSLPRGETFDWVDNVSIELTTMMLATLFDFPFEDRRKLTFWSDMVTTDAN > 2732941 > >> > 2732942 > TLEGGEEEWKGHLLECLAYFTELWNQRINSDKPGNDLITMLTRGEATKNMDPMEYLGN > >> > 2733115 > >> > 2733116 > IILLIVGGNDTTRNSMTGSVYALNKFPTEYDKLIADPGLIPNLSSEIIRWQTPLAHMRRT > >> > 2733295 > >> > 2733296 > ALEDFELGGKMIKKGDKVAMWYVSGNRDKTVFENADDVIIDRANARRQMSFGYGIHRCVG > >> > 2733475 > >> > 2733476 NRLGELQIMILWEEILKRFPKIELMAEPTRSPGCFVKGYTYMPVRI > 2733613 > >> > > >> > >33% to CYP107L1 AF087022 Streptomyces venezuelae > cytochrome P. = > >> pikC > >> > gene > >> > AF079139, 50% to seawater bacterial sequence > JCVI_PEP_1096680833653 > >> > 302400 > PYPLYTRLRPHAPVQGYRDYPPGTVPGEDEPVNAWVLLDYDQVSKAARDHRTFSSRDPLQ > >> > 302221 > >> > 302220 > EGSSAPTLMLVNHDNPEHDRLRNIVNLAFSRKRIEELSPYVSKMVHTLLDEVESASGGKV > >> > 302041 > >> > 302040 > EAMSDICAALPARVMVHLLGLPNEIAAKFRHWGTAFMLSADLTPEERQTSNV 301885 > >> > 301884 > ELYTYFVEQVTAMDEALAAGKDVPDSLMRALLTAEADGEKLTRDEVIRFCLTLVVAGAE > >> > 301708 > >> > 301707 > TTTFLLGNLLHHLATMPEMTERLRANRDDIEGFMNESLRHSGPPQRLFRIAEADVEVGGQ > >> > 301528 > >> > 301527 > QIRKGDWVALFFAAANHDPAMFPDPEKFDIDRTNLNKQLTFGVGVHHCLGSALAKAEARE > >> > 301348 > >> > 301347 LMNALL 301330 > >> > > >> > >JCVI_PEP_1096680833653 > /source_dna_id=JCVI_ORF_1096680833652 > >> > /offset=0 > >> > /translation_table=11 /length=250 > /full_length=250 > >> > Length = 250 > >> > > >> > Score = 586 ( 206.3 bits), Expect = 5.3e-59, P = 5.3e-59 > >> > Identities = 118/234 (50%), Positives = 160/234 (68%) > >> > > >> > Query: 1 > >> > > AFPYPLYTRLRPHAPVQGYRDYPPGTVPGEDEPVNAWVLLDYDQVSKAARDHRTFSSRDP > 60 > >> > A PYP Y +LR +PV GY D PPGTVPG+DEP +W +L > + V +AARD +TFSS > >> > DP > >> > Sbjct: 20 > >> > > ANPYPYYDQLRAASPVHGYVDLPPGTVPGQDEPKISWAVLRHADVVEAARDAQTFSSADP > 79 > >> > > >> > Query: 61 > >> > > LQEGSSAPTLMLVNHDNPEHDRLRNIVNLAFSRKRIEELSPYVSKMVHTLLDEVESASGG > 120 > >> > LQ S+APTLMLVN D P H +LR I + AF+ +RI > E P+V+++ +L + > >> > GG > >> > Sbjct: 80 > >> > > LQAESTAPTLMLVNDDPPRHSKLRAIAHKAFTPRRILEKGPWVAQVAAEIL----APCGG > 135 > >> > > >> > Query: 121 > >> > > KV-EAMSDICAALPARVMVHLLGLPNEIAAKFRHWGTAFMLSADLTPEERQTSNVELYTY > 179 > >> > + + M+D+ LP RVM ++G+ + A +FR+W > TAFMLSADLTP R+ SN E+ > >> > + > >> > Sbjct: 136 > >> > > RCFDFMTDVAPVLPTRVMAKVIGVDDAQAPRFRNWATAFMLSADLTPAAREASNREVAAF > 195 > >> > > >> > Query: 180 > FVEQVTAMDEALAAGKDVPDSLMRALLTAEADGEKLTRDEVIRFCLTLVVAGAET > >> 234 > >> > FV+ V + G D PD L+ AL+ ++DG++LTRDEV > RFC+TL+VAGAET > >> > Sbjct: 196 > FVDHVNRRYALIERGGDPPDDLVTALILEDSDGQRLTRDEVTRFCITLLVAGAET > >> 250 > >> > > >> > >48% to CYP191A1 Caulobacter crescentus CB15 GenPept > AAK22930 > >> > 75% to seawater bacterial sequence JCVI_PEP_1096682145269 > >> > 3343360 > PHEFYKTMRESAPVMWSDIRKGGDGFWSVSRYDDLKAVELAPTVFSSERGSINLGVAPKD > >> > 3343181 > >> > 3343180 > KWKPEKLVSAALNALINLDAPRHMEMRIQQMDFFAPAYVATLRDKVSAKIDSLLDDMESK > >> > 3343001 > >> > 3343000 > GPVVDMVPVFSEQLPLFTLCEMLGVDEEDRPKIAHWMHYLELASQYLTNPWQVIIKEPLF > >> > 3342821 > >> > 3342820 > PFRFFKAVKDMFAYGEAIMADRRANPREDLLTAIAKTKLSDEELPQEFL 3342674 > >> > 3342673 > DGSWLLIIFAGNDTSRNSLSGTIRLMTEFPDQRQMVLDDPSLIPRMSQEALRMISPVRHM > >> > 3342494 > >> > 3342493 > RRTAVEDTEINGQRIAKDEKVVLWYGAANRDPSMFPDPDRFDMMRDSVDKHLAFGHGVHK > >> > 3342314 > >> > 3342313 CLGSRIAQMQ 3342284 > >> > > >> > >JCVI_PEP_1096682145269 > /source_dna_id=JCVI_ORF_1096682145268 > >> > /offset=0 > >> > /translation_table=11 /length=367 > /full_length=367 > >> > Length = 367 > >> > > >> > Score = 1279 (450.2 bits), Expect = 1.9e-132, P = > 1.9e-132 > >> > Identities = 236/312 (75%), Positives = 273/312 (87%) > >> > > >> > Query: 48 > >> > > ERGSINLGVAPKDKWKPEKLVSAALNALINLDAPRHMEMRIQQMDFFAPAYVATLRDKVS > 107 > >> > +RGSIN+ V + WKPEKL AA N+LINLDAP > HMEMR+QQ +FF PAY+ > >> TLRDKV > >> > > >> > Sbjct: 1 > >> > > QRGSINMMVGDRKLWKPEKLAPAAFNSLINLDAPAHMEMRMQQSEFFFPAYIETLRDKVE > 60 > >> > > >> > Query: 108 > >> > > AKIDSLLDDMESKGPVVDMVPVFSEQLPLFTLCEMLGVDEEDRPKIAHWMHYLELASQYL > 167 > >> > AKID++LD++E +GPVVD > +FSE+LPLFTLCEMLG+DEEDRP+I WMH+LELA > >> > Q+L > >> > Sbjct: 61 > >> > > AKIDAMLDELERQGPVVDFAKLFSEELPLFTLCEMLGIDEEDRPRIKLWMHHLELAGQFL > 120 > >> > > >> > Query: 168 > >> > > TNPWQVIIKEPLFPFRFFKAVKDMFAYGEAIMADRRANPREDLLTAIAKTKLSDEELPQE > 227 > >> > NPWQ + EP+FPFRF K V++MFA+GE IM > DRRANPR+DLLT IA++KL E > >> > LPQE > >> > Sbjct: 121 > >> > > ANPWQTFLSEPMFPFRFNKVVQEMFAFGERIMKDRRANPRDDLLTVIAQSKLEGELLPQE > 180 > >> > > >> > Query: 228 > >> > > FLDGSWLLIIFAGNDTSRNSLSGTIRLMTEFPDQRQMVLDDPSLIPRMSQEALRMISPVR > 287 > >> > +LDGSWLLIIFAGNDTSRNSLSGTIRLMTEFP QR > >> +VLDDPSLIP+MS+EALRM+SPV > >> > > >> > Sbjct: 181 > >> > > YLDGSWLLIIFAGNDTSRNSLSGTIRLMTEFPTQRTLVLDDPSLIPQMSEEALRMVSPVI > 240 > >> > > >> > Query: 288 > >> > > HMRRTAVEDTEINGQRIAKDEKVVLWYGAANRDPSMFPDPDRFDMMRDSVDKHLAFGHGV > 347 > >> > HMRRTAVEDTEINGQ IAKDEKVVLWYGAANRDP +FPDPD F++ > >> > RD+V+KHLAFGHGV > >> > Sbjct: 241 > >> > > HMRRTAVEDTEINGQPIAKDEKVVLWYGAANRDPDIFPDPDTFNLHRDNVEKHLAFGHGV > 300 > >> > > >> > Query: 348 HKCLGSRIAQMQ 359 > >> > HKCLGSRIA+MQ > >> > Sbjct: 301 HKCLGSRIAKMQ 312 > >> > > >> > > >> > -- > >> > David R. Nelson > >> > Associate Professor > >> > Dept. of Molecular Sciences > >> > 858 Madison Ave. Suite G01 > >> > University of Tennessee > >> > Memphis TN 38163 > >> > (901) 448-8303 phone > >> > (901) 448-7360 fax > >> > dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> > >> > > >> > > >> > -- > >> > > ============================================================== > >> > Lieven Sterck Predoctoral > fellow > >> > > >> > Tel:+32 (0)9 3313821 Fax:+32 > (0)9 3313809 > >> > > >> > VIB Department of Plant Systems Biology, UGent > >> > Bioinformatics and Evolutionary Genomics Division > >> > Technologiepark 927, B-9052 Gent, > Belgium > >> > Email: > >> > lieven.sterck(a)psb.ugent.be > <mailto:lieven.sterck@psb.ugent.be> > >> > Website: http://bioinformatics.psb.ugent.be > >> > > >> > > -------------------------------------------------------------- > > >> > Algal Genetics Group > >> > UMR 7139 CNRS-UPMC > >> > Végétaux Marins et Biomolécules (Marine Plants and > Biomolecules) > >> > Station Biologique > >> > Place Georges Teissier, BP74 > >> > > >> > 29682 Roscoff Cedex, France > >> > Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html > >> > > >> > > ============================================================== > > >> > > >> > > >> > >> > >> -- > >> David R. Nelson > >> Associate Professor > >> Dept. of Molecular Sciences > >> 858 Madison Ave. Suite G01 > >> University of Tennessee > >> Memphis TN 38163 > >> (901) 448-8303 phone > >> (901) 448-7360 fax > >> dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> > >> > > > > > > > > -- > > David R. Nelson > > Associate Professor > > Dept. of Molecular Sciences > > 858 Madison Ave. Suite G01 > > University of Tennessee > > Memphis TN 38163 > > (901) 448-8303 phone > > (901) 448-7360 fax > > dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> > > > > > > > -- > > David R. Nelson > Associate Professor > Dept. of Molecular Sciences > 858 Madison Ave. Suite G01 > University of Tennessee > Memphis TN 38163 > (901) 448-8303 phone > (901) 448-7360 fax > dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> > > > > > -- > David R. Nelson > Associate Professor > Dept. of Molecular Sciences > 858 Madison Ave. Suite G01 > University of Tennessee > Memphis TN 38163 > (901) 448-8303 phone > (901) 448-7360 fax > dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> -- ============================================================== Lieven Sterck Predoctoral fellow Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.ugent.be <mailto:lieven.sterck@psb.ugent.be> Website: http://bioinformatics.psb.ugent.be -------------------------------------------------------------- Algal Genetics Group UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique Place Georges Teissier, BP74 29682 Roscoff Cedex, France Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html <http://www.sb-roscoff.fr/UMR7139/en/genetics.html> ============================================================== -- David R. Nelson Associate Professor Dept. of Molecular Sciences 858 Madison Ave. Suite G01 University of Tennessee Memphis TN 38163 (901) 448-8303 phone (901) 448-7360 fax dnelson(a)utmem.edu <mailto:dnelson@utmem.edu> -- ============================================================== Lieven Sterck Predoctoral fellow Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be -------------------------------------------------------------- Algal Genetics Group UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique Place Georges Teissier, BP74 29682 Roscoff Cedex, France Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html ==============================================================

1 0

[Beg-bogas] test
by Stefanie De Bodt 23 Oct '07

23 Oct '07

-- ================================================================== Stefanie De Bodt, PhD VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Technologiepark 927 B-9052 Gent Belgium Tel: 32 (0)9 3313692 Website: http://bioinformatics.psb.ugent.be ==================================================================

1 0

[Beg-bogas] test
by Jeffrey Fawcett 23 Oct '07

23 Oct '07

test -- ================================================================== Jeffrey Fawcett Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM jefaw(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

1 0

[Beg-bogas] hallo hallo
by Thomas Abeel 08 Oct '07

08 Oct '07

Is er daar iemand?

4 3

[Beg-bogas] test
by Kenny Billiau 08 Oct '07

08 Oct '07

I'm not a member .. do you hear me? -- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau(a)psb.ugent.be http://bioinformatics.psb.ugent.be ==================================================================

1 0