March 2010 - beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] [BOGAS] #150: sequence to GV
by BOGAS 03 Apr '12

03 Apr '12

#150: sequence to GV ------------------------------+--------------------------------------------- Reporter: liste | Owner: thabe Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: ArteminiServices | Version: Keywords: | ------------------------------+--------------------------------------------- need a diff system of getting seq to GV (art??), because loading full chrom of Medtr already is difficult. save will also not work due to server upload file limit -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/150> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #151: also a bogas login link on the genome page
by BOGAS 03 Apr '12

03 Apr '12

#151: also a bogas login link on the genome page -------------------------+-------------------------------------------------- Reporter: thpar | Owner: liste Type: enhancement | Status: new Priority: trivial | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- http://bioinformatics.psb.ugent.be/genomes/ -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/151> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #160: blast-hits and seq in AnnoJ
by BOGAS 30 Mar '10

30 Mar '10

#160: blast-hits and seq in AnnoJ -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: minor | Milestone: BOGAS_v4 Component: AnnoJ | Version: Keywords: | -------------------------+-------------------------------------------------- see if we can present blast-hits and hte actual seq in annoJ-BOGAS (without putting seq in DB) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/160> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #159: make locus_id stuff case insensitive
by BOGAS 30 Mar '10

30 Mar '10

#159: make locus_id stuff case insensitive -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- thx to mibel, we spotted a 'bug' in handeling the locus_ids when capitals are (not) used, some of the pics are wrong because they do 'eq' in stead of regEx. -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/159> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #158: integrate WS van GV/art in BOGAS ws
by BOGAS 18 Mar '10

18 Mar '10

#158: integrate WS van GV/art in BOGAS ws -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- check if possible at all ?? =>than no need to have 2 WS -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/158> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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Re: [Beg-bogas] [BOGAS] #52: link passwords of gdb (download) to ones in BOGAS
by BOGAS 17 Mar '10

17 Mar '10

#52: link passwords of gdb (download) to ones in BOGAS -------------------------------------------------+-------------------------- Reporter: lieven sterck <liste@…> | Owner: kebil Type: enhancement | Status: closed Priority: minor | Milestone: Component: Website | Version: development Resolution: fixed | Keywords: -------------------------------------------------+-------------------------- Changes (by liste): * status: new => closed * resolution: => fixed Comment: all credit for this goes to THPAR !!!! 3 cheers!!: mercie thomas, mercie, .... => modified the .htaccess file to first check bogas users, than the .htpasswd file using the AuthMySQL module stuff -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/52#comment:1> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Mar '10

17 Mar '10

2010/03/17 09:06:06 An error occured connecting to the database server Error message below: DBI connect('bogas_ostta_v1:psbsql02:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql02' (113) at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Mar '10

17 Mar '10

2010/03/17 09:02:03 An error occured connecting to the database server Error message below: DBI connect('bogas_tetur:psbsql02:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql02' (113) at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Mar '10

17 Mar '10

2010/03/17 08:58:00 An error occured connecting to the database server Error message below: DBI connect('bogas_solly_dev:psbsql02:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql02' (113) at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] [BOGAS] #156: xtra value for status field
by BOGAS 10 Mar '10

10 Mar '10

#156: xtra value for status field -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: minor | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- need an xtra value for the status field in locked table. something like 'error' for when update of a gene does not work. => check if all checks on status will still work (now query is often '<> inactive) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/156> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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