January 2011 - beg-bogas@psb.ugent.be

[Beg-bogas] [BOGAS] #150: sequence to GV
by BOGAS 03 Apr '12

03 Apr '12

#150: sequence to GV ------------------------------+--------------------------------------------- Reporter: liste | Owner: thabe Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: ArteminiServices | Version: Keywords: | ------------------------------+--------------------------------------------- need a diff system of getting seq to GV (art??), because loading full chrom of Medtr already is difficult. save will also not work due to server upload file limit -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/150> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #151: also a bogas login link on the genome page
by BOGAS 03 Apr '12

03 Apr '12

#151: also a bogas login link on the genome page -------------------------+-------------------------------------------------- Reporter: thpar | Owner: liste Type: enhancement | Status: new Priority: trivial | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- http://bioinformatics.psb.ugent.be/genomes/ -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/151> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #161: prot DOM section and figure
by BOGAS 30 Mar '12

30 Mar '12

#161: prot DOM section and figure ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: task | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ check section + fig to see if multiple occurrences of the same domain is available. (if map to hash -> no, replace by array or so) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/161> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] apply for a user account
by Jiang, Ke 30 Jan '11

30 Jan '11

Dear BOGAS team, I am a PostDoc working in Dr. Zach Lippman's lab in Cold Spring Harbor Lab. We're a group working on tomato genomics and part of the tomato genome groups. Stephane Rombauts invited us to join BOGAS to work on tomato annotations. Please consider at your convenience. Thank you very much! Ke ------------------------------------------ Ke Jiang, Ph.D. Post-doctoral Fellow Delbruck Laboratory Cold Spring Harbor Laboratory Cold Spring Harbor, NY 11724

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[Beg-bogas] [BOGAS] #171: url security
by BOGAS 18 Jan '11

18 Jan '11

#171: url security ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: defect | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ need to look into 'security' issues concerning 'genome' replacements in URL => sometimes possible to get to another (non-registrated) genome. eg with the newlocus function. =>possible to check 'login' on every URL?? -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/171> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] EBI HELP: InterProScan WS end-point changes
by User Support 13 Jan '11

13 Jan '11

Dear User A new InterProScan service is now available providing REST and document/literal SOAP interfaces. These have been tested extensively and are now ready for production. The present versions of this interface are scheduled for retirement mid February 2011. Please provide feedback on any issues encountered and any suggestions for additional features using http://www.ebi.ac.uk/support/. For details see the documentation: InterProScan (REST) http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_rest InterProScan (SOAP) http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap All the best, Support@Ebi

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[Beg-bogas] EBI HELP: Services downtime Jan 7th-10th 2011
by User Support 06 Jan '11

06 Jan '11

Dear User, As announced on our web site, services from EMBL-EBI will not be available from Friday January 7th 2011 16:30 GMT and until Monday January 10th 2011 12:00 GMT (if not earlier). This is due to urgent maintenance on the campus data centre. However, some services will remain operational (or semi-operational) as these are not running from the data centre in Hinxton: http://www.ebi.ac.uk/Tools/sss http://www.ebi.ac.uk/Tools/msa http://www.ebi.ac.uk/Tools/pfa http://www.ebi.ac.uk/QuickGo http://www.ebi.ac.uk/citexplore The corresponding SOAP/REST Web Services interfaces for the above will also remain operational. EMBL-EBI apologises for the inconvenience this may cause. Support@Ebi

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[Beg-bogas] EBI HELP: Services downtime Jan 7th-10th 2011
by User Support 06 Jan '11

06 Jan '11

Dear User, As announced on our web site, services from EMBL-EBI will not be available from Friday January 7th 2011 16:30 GMT and until Monday January 10th 2011 12:00 GMT (if not earlier). This is due to urgent maintenance on the campus data centre. However, some services will remain operational (or semi-operational) as these are not running from the data centre in Hinxton: http://www.ebi.ac.uk/Tools/sss http://www.ebi.ac.uk/Tools/msa http://www.ebi.ac.uk/Tools/pfa http://www.ebi.ac.uk/QuickGo http://www.ebi.ac.uk/citexplore The corresponding SOAP/REST Web Services interfaces for the above will also remain operational. EMBL-EBI apologises for the inconvenience this may cause. Support@Ebi

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[Beg-bogas] EBI HELP: Services downtime Jan 7th-10th 2011
by User Support 06 Jan '11

06 Jan '11

Dear User, As announced on our web site, services from EMBL-EBI will not be available from Friday January 7th 2011 16:30 GMT and until Monday January 10th 2011 12:00 GMT (if not earlier). This is due to urgent maintenance on the campus data centre. However, some services will remain operational (or semi-operational) as these are not running from the data centre in Hinxton: http://www.ebi.ac.uk/Tools/sss http://www.ebi.ac.uk/Tools/msa http://www.ebi.ac.uk/Tools/pfa http://www.ebi.ac.uk/QuickGo http://www.ebi.ac.uk/citexplore The corresponding SOAP/REST Web Services interfaces for the above will also remain operational. EMBL-EBI apologises for the inconvenience this may cause. Support@Ebi

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