December 2011 - beg-bogas@psb.ugent.be

[Beg-bogas] [BOGAS] #150: sequence to GV
by BOGAS 03 Apr '12

03 Apr '12

#150: sequence to GV ------------------------------+--------------------------------------------- Reporter: liste | Owner: thabe Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: ArteminiServices | Version: Keywords: | ------------------------------+--------------------------------------------- need a diff system of getting seq to GV (art??), because loading full chrom of Medtr already is difficult. save will also not work due to server upload file limit -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/150> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #151: also a bogas login link on the genome page
by BOGAS 03 Apr '12

03 Apr '12

#151: also a bogas login link on the genome page -------------------------+-------------------------------------------------- Reporter: thpar | Owner: liste Type: enhancement | Status: new Priority: trivial | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- http://bioinformatics.psb.ugent.be/genomes/ -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/151> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #161: prot DOM section and figure
by BOGAS 30 Mar '12

30 Mar '12

#161: prot DOM section and figure ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: task | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ check section + fig to see if multiple occurrences of the same domain is available. (if map to hash -> no, replace by array or so) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/161> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #183: webserver cache
by BOGAS 23 Dec '11

23 Dec '11

#183: webserver cache ---------------------+------------------------------------------------------ Reporter: strom | Owner: liste Type: defect | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ Keeping images etc in the cache of the web server is nice to speed-up the visualization. But some time every 12-24h, this cache should be purged... updating data on bogas, to then see that nothing changes is frustrating/misleading for all... Can't we put an expiration date on files in the cache? -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/183> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] problems blasting in the ectocarpus website
by Andres Ritter 23 Dec '11

23 Dec '11

Dear Mr(s), I can not blast into the ectocarpus genome any more. Is this normal? Greetings, -- *Andrés RITTER* Departamento de Ecología Facultad de Ciencias Biológicas Pontificia Universidad Católica de Chile Portugal 49 Santiago - Chile Casilla114-D

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[Beg-bogas] Populus gene density data
by Vining, Kelly 02 Dec '11

02 Dec '11

Hello, I see you have a chromosome graphic showing poplar gene density on the Bogas home page. Could you please tell me where I might be able to download/plot this gene density data to generate my own graphic? What tool did you use to generate this graphic? Thanks for any help. Kind regards, Kelly Vining Faculty Research Associate 352 Richardson Hall Oregon State University Corvallis, OR 97331 (541) 737-2843

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