June 2011 - beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] [BOGAS] #150: sequence to GV
by BOGAS 03 Apr '12

03 Apr '12

#150: sequence to GV ------------------------------+--------------------------------------------- Reporter: liste | Owner: thabe Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: ArteminiServices | Version: Keywords: | ------------------------------+--------------------------------------------- need a diff system of getting seq to GV (art??), because loading full chrom of Medtr already is difficult. save will also not work due to server upload file limit -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/150> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #151: also a bogas login link on the genome page
by BOGAS 03 Apr '12

03 Apr '12

#151: also a bogas login link on the genome page -------------------------+-------------------------------------------------- Reporter: thpar | Owner: liste Type: enhancement | Status: new Priority: trivial | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- http://bioinformatics.psb.ugent.be/genomes/ -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/151> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #161: prot DOM section and figure
by BOGAS 30 Mar '12

30 Mar '12

#161: prot DOM section and figure ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: task | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ check section + fig to see if multiple occurrences of the same domain is available. (if map to hash -> no, replace by array or so) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/161> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] BOGAS: genomeview
by Inge Van Bogaert 23 Jun '11

23 Jun '11

Dear, I tried to use the BOGAS platform for Candida bombicola (set up by Bing Li, now on a hoiday). I could modify the annotation of a certain gene, but I was not able to change the gene structure in Genomeview (which is wrong). The pop-up mentioned I only had read-only access. What steps should I take to get full access? Many thanks in advance, Inge Van Bogaert -- Dr. ir. Inge Van Bogaert Laboratory of Industrial Biotechnology and Biocatalysis Faculty of Bioscience Engineering Ghent University Coupure Links 653 9000 Ghent - Belgium Tel. +32-9-264.60.34 Fax +32-9-264.62.31 Inge.VanBogaert(a)UGent.be www.InBio.be

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[Beg-bogas] [BOGAS] #174: try to get focus gene on top in context svg
by BOGAS 21 Jun '11

21 Jun '11

#174: try to get focus gene on top in context svg -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- if the focus gene is located in intron of other gene it will be 'masked' out due to the overlaying clickable square of the larger gene => solution try to get the focus to be added last in the svg object. -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/174> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] Update on Ectocarpus Gene_Info
by Agnieszka Lipinska 16 Jun '11

16 Jun '11

Dear, I am working on Ectocarpus siliculosus transcription data and I noticed that there are a lot of changes concerning gene information available on Bogas gene site and in the compiled Ectsi_gene_info file. Is there a possibility for update of that file? Or is there another way to obtain info for a large set of gene IDs directly form the site (instead of checking every gene separately)? Thank you! Regards, Agnieszka Lipinska -- Agnieszka Lipinska PhD student Onderzoeksgroep Algologie, UGent. Krijgslaan 281, S8, 9000 Gent; Belgium 0032-9-2648502 // Fax. -32-9-2648599 http://www.phycology.ugent.be/

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[Beg-bogas] Out of Office: BOGAS - Eucalyptus grandis Annotation
by Strauss, Steven 14 Jun '11

14 Jun '11

I am out of town & will be unable to answer most emails until Friday June 17th 2011. Please call 541 737 2244 if this is an urgent matter. Thanks very much. Steven H. Strauss, Professor, Dept of Forest Ecosystems and Society , Oregon State University Richardson Hall, 3180 SW Jefferson Way Corvallis, OR 97331-5752 USA Phone: 541 737 6578, Fax: 541 737 1393 Cell 541 760 7357

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