July 2012 - beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] start update routine (message to genome admins)
by Lieven Sterck 03 Aug '12

03 Aug '12

dear all, since today I improved the checkandstart update script of BOGAS/ORCAE from now on it's not needed anymore to manually add your genome in that script, he will check to list of genomes (once a day) from the bogas config file ! still one drawback, he is reading the file that is in my SVN ... but unfortunately I don't have a neat and easy solution for that currently :-/ ays, L. -- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true" - H. Simpson

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Re: [Beg-bogas] BOGAS - Geotrichum candidum Annotation
by Sandrine Mallet 30 Jul '12

30 Jul '12

dear Madam/Sir, I juste would like to inform you that "Genomeview" doesn't work this day. thank tou very much for your help Best regards Sandrine Le 05/07/2012 15:46, beg-bogas(a)psb.vib-ugent.be a écrit : > Dear Madam/Sir, > > you are invited to participate in the annotation effort for the genome > of Geotrichum candidum. > Please follow the link provided below to register yourself. > > http://bioinformatics.psb.ugent.be/webtools/bogas/users/invitationcode/cc71… > > > In case the above link does not work: go to _url and enter > cc715147427ea498bc8949893352b5de > > By doing you so you will be granted access to the restricted website > where you are able to modify the gene annotations. > > > thank you, > the BOGAS-team. > > > >

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 30 Jul '12

30 Jul '12

2012/07/30 14:04:09 An error occured connecting to the database server Error message below: Can't locate object method "new" via package "Algorithm::Diff" at /software/shared/apps/x86_64/perl/5.10.1/lib/site_perl/5.10.1/Array/Diff.pm line 75.

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:27:42 An error occured connecting to the database server Error message below: DBI connect('bogas_eugrav2:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:27:08 An error occured connecting to the database server Error message below: DBI connect('bogas_trpee:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:24:39 An error occured connecting to the database server Error message below: DBI connect('bogas_eugrav2:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:24:05 An error occured connecting to the database server Error message below: DBI connect('bogas_trpee:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:21:36 An error occured connecting to the database server Error message below: DBI connect('bogas_eugrav2:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:21:02 An error occured connecting to the database server Error message below: DBI connect('bogas_trpee:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 27 Jul '12

27 Jul '12

2012/07/27 15:18:33 An error occured connecting to the database server Error message below: DBI connect('bogas_eugrav2:psbsql04:3306','bogas',...) failed: Can't connect to MySQL server on 'psbsql04' (113) at modules/BOGAS/DB.pm line 260

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