Hi Alex, Searching for ambiguous motifs (amino acid and nucleotides) will be supported in the next release of GenomeView and will be included in ORCAE shortly thereafter. cheers, Thomas On 11/9/2012 11:55 AM, Alexander Schober wrote:
Hi Thomas Abeel,
i am a new student at SAMS and have just started to work on a LRR-ROCO project with my supervisor Claire Gachon. We already wrote an email yesterday, and therefore i wanted to thank you for your kind answer!
Unfortunately we came up with another little problem regarding the handling of GenomeView.
I opened up a random locus (e.g. Esi0003_0092) and tried to search for an ambiguous amino acid motif(e.g. LxxLxLxxNxL), using the Ctrl+F command. Sadly, i was not able to feed in the query motif in a proper way to get hits. (tried: stars, dots, dashes... also considered faq and manual)
How do i have to type in the ambiguous amino acids within an motif to get hits?
Thank you very much in advance!
Best wishes and a nice weekend, Alex _______________________________________________ Beg-bogas mailing list Beg-bogas@psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/beg-bogas