On 11/10/2011 17:30, BOGAS wrote:

#175: intron checks -------------------------+-------------------------------------------------- Reporter: brhel | Owner: Lieven Type: enhancement | Status: new Priority: critical | Milestone: Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- It would be **nice** if you could add a 'tag' to the gene information (in Genomeview / Artemini) which would be recognized by BOGAS so that it doesn't run it's intron checking procedure anymore. In my case (Micromonas) we have some documented non-canonical introns which would not get trough the checking procedure.

Why not add to the information, features like /donor=integer-position or /stop=ARG and that for each exception (like you already have with tags /TE or SECIS. And let BOGAS see this as a list of exceptions, overruling the default. This way you will have a general way to add this kind of flexibility, and one will have to add the tag explicitly, and this will be a double check/control. -- ================================================================== Stephane Rombauts Principal Scientific staff Bioinformatics & Systems Biology Division Tel:+32 (0)9 331 38 21 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM strom@psb.vib-ugent.be http://bioinformatics.psb.ugent.be/ ==================================================================