[Beg-bogas] GenomeView for BOGAS upgraded to 1.9998

Hi all, I've updated the version available in BOGAS to 1.9998. I've also tied BOGAS to the official release to that whenever I make a new release BOGAS is automatically updated as well. What's new since the last version that was in BOGAS (1.90), although this is not all relevant for BOGAS: # hover windows for short reads # limit number of undo's that are stored for memory efficieny. # display of pairing information # more configuration options # improved handling of command line arguments to load sources # clear cache option # fixed bug in feature editing not properly updating some panels # simplified editing of features to be more user friendly # fixed a bunch of bugs in JAnnot # halved memory of Sequence # improvements to fasta parser # Session (re)store (#2560880) # Split pile-up coverage graph in forward and reverse coverage # Improvements to short read representation to keep it more responsive(#2849434) # Fixed navigation bug where all key navigation would be done twice (#2851257) # Implemented pop-up screen that shows the actual read coverage when hovering over the pile-up graph (#2839254) # Improved search and added overlap search # Improved gene structure track # Improved feature track # Improved multiple alignment track: faster, less memory and better visualized # Improved keyboard navigation # New navigation panel, inspired by Argo2 # Multi-threaded track loading # Removed BioMoby support # Removed chromosome view # Major GUI reorganization to accommodate removed and added features # Fixed a bunch of bugs and glitches # Added basic support for Distributed Annotation Servers (DAS) # Added short read support # Added support for authentication and SSL # Added caching to URLSource which makes it more efficient to retrieve data from the network cheers, Thomas
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Thomas Abeel