[Beg-bogas] Search for ambiguous aa motifs with GenomeView
Hi Thomas Abeel, i am a new student at SAMS and have just started to work on a LRR-ROCO project with my supervisor Claire Gachon. We already wrote an email yesterday, and therefore i wanted to thank you for your kind answer! Unfortunately we came up with another little problem regarding the handling of GenomeView. I opened up a random locus (e.g. Esi0003_0092) and tried to search for an ambiguous amino acid motif(e.g. LxxLxLxxNxL), using the Ctrl+F command. Sadly, i was not able to feed in the query motif in a proper way to get hits. (tried: stars, dots, dashes... also considered faq and manual) How do i have to type in the ambiguous amino acids within an motif to get hits? Thank you very much in advance! Best wishes and a nice weekend, Alex
Hi Alex, Searching for ambiguous motifs (amino acid and nucleotides) will be supported in the next release of GenomeView and will be included in ORCAE shortly thereafter. cheers, Thomas On 11/9/2012 11:55 AM, Alexander Schober wrote:
Hi Thomas Abeel,
i am a new student at SAMS and have just started to work on a LRR-ROCO project with my supervisor Claire Gachon. We already wrote an email yesterday, and therefore i wanted to thank you for your kind answer!
Unfortunately we came up with another little problem regarding the handling of GenomeView.
I opened up a random locus (e.g. Esi0003_0092) and tried to search for an ambiguous amino acid motif(e.g. LxxLxLxxNxL), using the Ctrl+F command. Sadly, i was not able to feed in the query motif in a proper way to get hits. (tried: stars, dots, dashes... also considered faq and manual)
How do i have to type in the ambiguous amino acids within an motif to get hits?
Thank you very much in advance!
Best wishes and a nice weekend, Alex _______________________________________________ Beg-bogas mailing list Beg-bogas@psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/beg-bogas
participants (2)
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Alexander Schober -
Thomas Abeel