[Beg-bogas] BRe: New BOGAS version online (fwd)
And yet another problem. ---------- Forwarded message ---------- Date: Tue, 01 Sep 2009 12:34:57 +0200 From: Marek Elias <melias@natur.cuni.cz> To: Kenny Billiau <kebil@psb.vib-ugent.be> Subject: Re: [Beg-bogas] New BOGAS version online Hi Kenny, one more thing - I am just trying to modify the locus Esi0281_0023 using GenomeView. The gene is very big with many exons, but if you try to modify the coordinates, they are no all diplayed in the respective vindow, because it seems it to be restricted to display some maximal number of lines and it is impossible to croll down. How then is it possible to modify the region of the gene outside this selection? Thanks, Marek Cituji Kenny Billiau <kebil@psb.vib-ugent.be>:
Hi,
it's ok to bother me so much :) I'm here to fix those problems. It's gonna take some longer to fix this one as it seems to work fine on my test loci, but not outside the scope.
I'll geet back to you as soon as it's fixed,
Kenny
On Mon, 31 Aug 2009, Marek Elias wrote:
Hi Kenny,
I am sorry for bothering you again. Artemini still seems to have problems, now the response after my attempts to save chenged cooridnates is "Wrong params". I have no idea what this means. Thanks, Marek
Cituji Kenny Billiau <kenny.billiau@ugent.be>:
Hi,
ok, sorry for the inconvenience. The problem is sovled now :)
I cannot really answer the question about splitting of genemodels. I'm looking into it, but seem to experience problems with artemini myself. I'll get back to you on that one as soon as I've fixed those problems.
Kenny
On Mon, 31 Aug 2009, Marek Elias wrote:
Hi Kenny,
I am still encountering troubles with he Artemeni tool, I have just tried > to save new coordinates for the locus Esi0307_0011, but after clicking on > "Save To Sever" there is no reaction. The model in BOGAS does not chenge > and when I try to swith the Artemeni window off a warning is diplayed > that the changes have not been saved. Could you, please, look on this > problem? Thanks, marek
Cituji Kenny Billiau <kenny.billiau@ugent.be>: Hi, > thx for letting us know :) The artemini tool is working again. > wkr, Kenny > On Sun, 30 Aug 2009, Marek Elias wrote: > > Hi Lieven, > please, ignore my previous message, a long time has simply > elapsed since I was using the BOGAS system last time, so I forgot how to actually modify gene models, but I have finally recalled. However, I nevertheless encounter an unexpected problem, while trying to modife the gene model of Esi0032_0099, the Artemini tool fails to start, > > > with the following error message: > "Message: Server returned HTTP response code: 500 for URL: http://bioinformatics..." > Could you, please, look on this. Thanks a lot! Marek > > > Cituji Lieven Sterck <lieven.sterck@psb.vib-ugent.be>: > > Dear all, > > > we're pleased to announce that a new version of the BOGAS > > > > > > > > > portal has > been put online. > > > This version includes several fixes in protocols and > > > layout. > > > > > > Also a > 'true' genome browser has been incorporated (AnnoJ), the search > functionality has been upgraded, tiling array info is now > > > > > available, > a new annotation tool is provided (GenomeView), more > information > > > > is > included in the images (pop-up system), ... > > > Thanks all for your input and suggestions, > enjoy! > > > best regards, > lieven > > > PS. Remarks, questions, suggestions are off course still > > > > > > > > > welcome
-- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau@ugent.be http://bioinformatics.psb.ugent.be ================================================================== "What we feel isn't important. The only question is what we do." -- Rohl
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Kenny Billiau