- beg-evodevo@psb.ugent.be - maillist.psb.ugent.be

[Beg-evodevo] PLoS Computational Biology: Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
by Klaas Vandepoele 22 May '08

22 May '08

http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000063 -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ --------------------------------------------------------- Not shy of a spark, a knife twists at the thought that I should fall short of the mark

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[Beg-evodevo] pnas - estimating the size of the human interactome
by Tine Blomme 15 May '08

15 May '08

Available on the L-drive! Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, and Carsten Wiuf *From the Cover: Estimating the size of the human interactome* PNAS 2008 105: 6959-6964; published online on May 12, 2008, 10.1073/pnas.0708078105 -- ================================================================== Tine Blomme Tel:+32 (0)9 331 38 22 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM tiblo(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Beg-evodevo] evodevo meetings?
by Tine Blomme 14 May '08

14 May '08

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[Beg-evodevo] DNA methylation profiling of pseudogene-parental g...[Genomics. 2008] - PubMed Result
by Klaas Vandepoele 05 May '08

05 May '08

http://www.ncbi.nlm.nih.gov/pubmed/18450418?dopt=Abstract -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ Innocence and arrogance entwined, all stories are stale

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[Beg-evodevo] PLoS Computational Biology: Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
by Klaas Vandepoele 28 Apr '08

28 Apr '08

Interesting comparison and evaluation of simple/complex similarity metrics in a pairwise/multiple species framework http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.100… -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ Innocence and arrogance entwined, all your stories are stale

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[Beg-evodevo] RECOMB Satellite Workshop on Comparative Genomics 2007 - Videos Available
by Klaas Vandepoele 25 Apr '08

25 Apr '08

Recorded talks from the workshop last year. http://www.calit2.net/newsroom/article.php?id=1175 -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ Innocence and arrogance entwined, all your stories are stale

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[Beg-evodevo] Exposing the fitness contribution of duplicated ge...[Nat Genet. 2008] - PubMed Result
by Yves Van de Peer 20 Apr '08

20 Apr '08

http://www.ncbi.nlm.nih.gov/pubmed/18408719?dopt=Abstract -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-evodevo] eggNOG: automated construction and annotation of o...[Nucleic Acids Res. 2008] - PubMed Result
by Klaas Vandepoele 10 Apr '08

10 Apr '08

sorry for cross-posting! http://www.ncbi.nlm.nih.gov/pubmed/17942413?ordinalpos=1&itool=EntrezSystem… Related to the problem of putting (without manual intervention) a name on a gene family: this paper uses the LCS algorithm and weighted scoring scheme to functionally annotate gene families based in gene descriptions/GO terms/KEGG terms. -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ What happened? Etcetera etcetera

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[Beg-evodevo] BioMed Central | Abstract | 1471-2164-9-147 | Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens
by Cindy Martens 05 Apr '08

05 Apr '08

http://www.biomedcentral.com/1471-2164/9/147 -- ================================================================== Cindy Martens VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM Tel: +32 (0)9 331 38 22 Fax: +32 (0)9 331 38 09 E-mail: cindy.martens(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be/ ==================================================================

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[Beg-evodevo] PLoS Genetics: Role of Duplicate Genes in Robustness against Deleterious Human Mutations
by Klaas Vandepoele 29 Mar '08

29 Mar '08

http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.100…

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