-------- Original Message -------- Subject: A problem with i-ADHoRe Date: Fri, 23 Jan 2009 13:21:43 -0800 (PST) From: Sahar N.Malakshah <snohz001@ucr.edu> To: yves.vandepeer@psb.ugent.be <yves.vandepeer@psb.ugent.be> Hi professor Vandepeer; I'm a PhD student and trying to run i-ADHoRe on its sample datasets using this command: /home/sahar/PhD_thesis/iADHoRe/i-ADHoRe testset.ini But I encountered Segmentation fault at the middle of running the program(i've pasted what I get at the end of this email). I've not installed the Perl API, yet, but I think it's not related to the error that I've received. So I would appreciate if you can help me to solve this problem. Our machine information:Linux liulab01.ucr.edu 2.6.18-53.1.19.el5 #1 SMP Tue Apr 22 03:01:10 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux This is the error: [sahar@liulab01 testset]$ /home/sahar/PhD_thesis/iADHoRe/i-ADHoRe testset.ini This is i-ADHoRe 2.0 Written by Koen Janssens Algorithm designed by Koen Janssens, Cedric Simillion, Klaas Vandepoele, Yvan Saeys and Yves Van de Peer (c) 2006, Flanders Interuniversity Institute of Biotechnology, VIB Parsing settings file... Done! Creating dataset... Done! Mapping gene pairs... Done! Remapping tandem duplicates................. Done! Detecting level 2 multiplicons ................. ................ ............... .............. ............. ............ ........... .......... ......... ........ ....... ...... ..... .... ... .. . Done! Higher Level Detection 857 multiplicons to evaluate - evaluating level 2 multiplicon... Segmentation fault [sahar@liulab01 testset]$ /home/sahar/PhD_thesis/iADHoRe/i-ADHoRe testset.ini Sahar Nohzadeh-Malakshah 3133 Batchelor Hall Department of Botany and Plant Sciences UC Riverside, CA, USA E-mail: snohz001@ucr.edu -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer@psb.ugent.be http://bioinformatics.psb.ugent.be/