August 2006 - beg-sysbiol@psb.ugent.be

[Beg-sysbiol] Move beg-sysbiol maillist
by Dany Cuyt 07 Aug '06

07 Aug '06

*To all members of the beg-sysbiol maillist: * The maillist has been moved to another server. Please use the following link to access the beg-sysbiol maillist https://maillist.psb.ugent.be/mailman/listinfo/beg-sysbiol In case of problems please contact frdie(a)psb.ugent.be or dacuy(a)psb.ugent.be -- ================================================================== Dany Cuyt DEPARTMENT OF PLANT SYSTEMS BIOLOGY Fax:32 (0)9 3313809 GHENT UNIVERSITY/VIB, Technology Park 927, B-9052 Gent, Belgium Vlaams Interuniversitair Instituut voor Biotechnologie VIB mailto:dacuy@psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Beg-sysbiol] Inferring gene regulatory networks from multiple microarray datasets -- Wang et al., 10.1093/bioinformatics/btl396 -- Bioinformatics
by Yves Van de Peer 07 Aug '06

07 Aug '06

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btl396v2

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[Beg-sysbiol] Entrez PubMed
by Yves Van de Peer 06 Aug '06

06 Aug '06

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&dopt=Abstract&db…

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[Beg-sysbiol] Entrez PubMed
by Yves Van de Peer 06 Aug '06

06 Aug '06

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&dopt=Abstract&db…

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[Beg-sysbiol] svn branch
by Eric Bonnet 04 Aug '06

04 Aug '06

Hi there, We've created a branch for our project in the svn system. The idea is to work on a "release" version of the code that will be published together with the paper, slightly more polished and without unnecessary options. So after a svn update or checkout you should find a dir Release1 in the "branch" svn directory, next to the "trunk" who is containing the main version. - The new realease adopt the standard java naming convention: new package name is be.ugent.psb.ModuleNetwork - I created a "parameter file" system: the program is looking in the current directory for a file named "ModuleNetwork.par" text file containing all the necessary parameters in the form variable_name=value eg lambda0=0.1. The file can also be given on the command line as an argument. I've put an example in segal/java/test_data. Voila ! Eric

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[Beg-sysbiol] outline BMC paper
by Tom Michoel 03 Aug '06

03 Aug '06

Hello, I wrote down a trial outline for our paper. Maybe we can discuss this as well as some new results sometime tomorrow? Tom

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[Beg-sysbiol] Inferring models of gene expression dynamics [for Arabidopsis floral morphogenesis]
by Roeland Merks 03 Aug '06

03 Aug '06

Hi all, Have seen this paper? (See attachment). Cheers, Roeland -- Roeland Merks Department of Plant Systems Biology VIB / Ghent University Technologiepark 927 B-9052 Ghent, Belgium http://www.psb.ugent.be Tel. +32-(0)9-33 13825 email: post(a)roelandmerks.nl http://www.roelandmerks.nl weblog: http://biolog.volkskrantblog.nl

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