October 2007 - beg-sysbiol@psb.ugent.be

[Beg-sysbiol] Comparison of reverse engineering methods using an...[Ann N Y Acad Sci. 2007] - PubMed Result
by Yves Van de Peer 14 Oct '07

14 Oct '07

http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&dopt=AbstractPlus&db=… -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] NAS move
by Eric Bonnet 12 Oct '07

12 Oct '07

Hi there, As you may remember, our data will have to be moved soon to a new NAS share. The idea will be to have a future /group/sysbiol data repository where most of the data generated by our "group" will be stored (this does not include your home directory). For simplicity, Luc asks to put everything under one "root" directory, so that he can copy the data to the new share easily. For the moment, this directory is supposed to be /group/biocomp/sysbiol, but I would like to suggest to take /group/biocomp/projects/segal as the "root". The main reason is that the source code repository is there, so it will be less complex for us to reorganize things. In practice, every data related to sysbiol should be moved to /group/biocomp/projects/segal For example if you have something like /group/biocomp/users/erbon/mydata, you can move it with the command mv /group/biocomp/users/erbon/mydata /group/biocomp/projects/segal It's important to move data and not to copy. We do not have a deadline, but it would be great if it could be done in the coming weeks. Don't hesitate to ask me if you have further questions... Thanks, Eric

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[Beg-sysbiol] presentation cell cycle expression analysis
by Steven Maere 12 Oct '07

12 Oct '07

I put the update presentation on cell cycle expression analysis, stmae_cc_update_101007.ppt, in P:/users/stmae. The latest ENIGMA results can be found in the enigma_cell_cycle folder at the same location. S -- ================================================================== Steven Maere, PhD Dept. of Plant Systems Biology Bioinformatics & Evolutionary Genomics research group VIB / Ghent University Technologiepark 927 B-9052 Gent BELGIUM tel: +32 9 331 3810 fax: +32 9 331 3809 email: stmae(a)psb.UGent.be http://www.psb.UGent.be http://bioinformatics.psb.ugent.be/ ==================================================================

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[Beg-sysbiol] (no subject)
by Yves Van de Peer 10 Oct '07

10 Oct '07

Dames, Heren, Ik zou een figuur moeten maken voor een CropDesign project waarin aangetoond wordt hoe we uit 46.000 mais genen de 200 meest belovende (voor bepaalde processen) gaan selecteren door middel van het maken van netwerken en het integreren van verschillende data. Hebben jullie ergens zo'n voorbeeldfiguur? Of kennen jullie een publicatie waar zo'n figuur staat die als voorbeeld zou kunnen dienen ... Iemand van CropDesign kan die dan gebruiken als basis om een - voor ons project - meer specifieke figuur te maken. Alvast bedankt, Yves -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] Ig-Nobel prizes
by Greg Amoutzias 05 Oct '07

05 Oct '07

http://news.bbc.co.uk/2/hi/science/nature/7026150.stm --- Greg Amoutzias, Ph.D VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3758 Fax: +32 (0)9 331 3809 email: gramo(a)psb.ugent.be

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[Beg-sysbiol] Our friend Eran Segal
by Eric Bonnet 02 Oct '07

02 Oct '07

...is definitely turning his mind towards microRNAs: http://www.nature.com/ng/journal/v39/n10/abs/ng2135.html the corresponding news and views: http://www.nature.com/ng/journal/v39/n10/full/ng1007-1191.html

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