February 2008 - beg-sysbiol@psb.ugent.be

[Beg-sysbiol] update fuzzy clustering algo
by Tom Michoel 25 Feb '08

25 Feb '08

Hi, For those who use the matlab functions to create "tight clusters": there is an updated version "matrixClustSym.m" in directory "/group/sysbiol/Matlab/FuzzyClust/". The previous version could run into trouble if at some point in the process the network became disconnected into separate components, the new version handles this gracefully. If you never got an output message about this "degeneracy", your clusters will remain the same. Tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] (no subject)
by Greg Amoutzias 21 Feb '08

21 Feb '08

A very interesting article: http://news.bbc.co.uk/2/hi/health/7254555.stm Should we start ordering sofas? --- Greg Amoutzias, Ph.D VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3758 Fax: +32 (0)9 331 3809 email: gramo(a)psb.ugent.be

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[Beg-sysbiol] working at home this morning
by Tom Michoel 20 Feb '08

20 Feb '08

waiting for a delivery (by mail, not a baby ;-) see you this afternoon, tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] sick
by Eric Bonnet 19 Feb '08

19 Feb '08

hi there, went to the doctor yesterday and now I have to stay at home for 2 days. Sorry for the meeting of this afternoon. See you on thursday. Eric

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[Beg-sysbiol] meeting
by Eric Bonnet 15 Feb '08

15 Feb '08

FYI Meeting MicroRNAs in health and disease 2 - Liege http://www.fmv.ulg.ac.be/genmol/Department/miRNA_Health_Disease/miRNA_H&D_P…

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[Beg-sysbiol] update lemone code
by Eric Bonnet 14 Feb '08

14 Feb '08

small update: added a drawConditions method to the module class to draw figures including the conditions names. The conditionSet list of the ModuleNetwork object has to be filled with the conditions names. e.

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[Beg-sysbiol] I hope that at least some of you can/plan to attend? Thanks, Yves
by Yves Van de Peer 14 Feb '08

14 Feb '08

-------- Original Message -------- Subject: [Bioframe] Eli Lilly Systems Biology framework Date: Wed, 13 Feb 2008 13:37:36 +0100 (CET) From: bemah(a)psb.ugent.be To: bioframe(a)psb.ugent.be CC: beg-sysbiol(a)psb.ugent.be Dear all, At the Bioframe UC-meeting Hans Constandt announced that his company would most likely release their internal SB-framework and make it open-source. It looks like this will happen by the end of march. Hans will be coming to Zwijnaarde this friday (from 9 till 12) and will demonstrate this framework. If you plan to attend please let me know so I can look for an appropriate room, Thanks, Ben _______________________________________________ Bioframe mailing list Bioframe(a)psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/bioframe -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] 5th International Symposium on Networks in Bioinformatics
by Tom Michoel 14 Feb '08

14 Feb '08

http://isnb.amc.uva.nl/isnb2008/ From the scope of the meeting: [...] We also want invite this year researchers working on gene networks in plants (e.g. Arabidopsis). [...] I suggest we submit an abstract? Even though we may not have complete results by then, I think it's good to be there and show we're working on it. Tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] Eli Lilly Systems Biology framework
by bemah＠psb.ugent.be 13 Feb '08

13 Feb '08

Dear all, At the Bioframe UC-meeting Hans Constandt announced that his company would most likely release their internal SB-framework and make it open-source. It looks like this will happen by the end of march. Hans will be coming to Zwijnaarde this friday (from 9 till 12) and will demonstrate this framework. If you plan to attend please let me know so I can look for an appropriate room, Thanks, Ben

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[Beg-sysbiol] evolution software
by Greg Amoutzias 13 Feb '08

13 Feb '08

Can the lab request one or more licenses for this software on evolution? http://news.bbc.co.uk/2/hi/technology/7242563.stm --- Greg Amoutzias, Ph.D VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3758 Fax: +32 (0)9 331 3809 email: gramo(a)psb.ugent.be

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