March 2009 - beg-sysbiol@psb.ugent.be

[Beg-sysbiol] Allegro: Analyzing expression and sequence in concert to discover regulatory programs -- Halperin et al. 37 (5): 1566 -- Nucleic Acids Research
by Klaas Vandepoele 25 Mar '09

25 Mar '09

http://nar.oxfordjournals.org/cgi/content/abstract/37/5/1566?etoc -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be/ --------------------------------------------------------- it's hard to keep the animo from driftin' away nowadays

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[Beg-sysbiol] LiMoNe
by Tom Michoel 13 Mar '09

13 Mar '09

From our VIB colleagues :-) http://med.kuleuven.be/cme-mg/services/DSI/Welcome.html

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[Beg-sysbiol] [Fwd: Re: VIB Bayer BioInf meeting...]
by Yves Van de Peer 12 Mar '09

12 Mar '09

-------- Original Message -------- Subject: Re: VIB Bayer BioInf meeting... Date: Wed, 11 Mar 2009 11:52:28 +0100 From: sophie.rozenfeld(a)bayercropscience.com To: yves.vandepeer(a)psb.vib-ugent.be CC: laurent.viau(a)bayercropscience.com Dear Yves, I come back to you in order to organize the VIB - Bayer Meeting we'll have on April the 7th. My proposal is to start with about 2 hours dedicated to your projects and area of competence. Then , we can present to you our area of competence and our projects. And we may finish with one our discussion about possible overlaping interests. Of course, we'll try to focus on activities that can be of interest for you. If this proposal is ok for you, please send me the list of topics you would like to present (I guess one presentation should be between 20 and 30 minutes depending on the topic) And based on your list, I'll will add our topics, and we can fine-tune the agenda together. Don't hesitate to contact me for any question. Reagrds, Sophie. _____________________ Sophie ROZENFELD BAYER BIOSCIENCE BioInformation Manager ____________________ Technologiepark 38 B-9052 Zwijnaarde Belgium tel : 32 (0)9 243 04 16 ____________________ Yves Van de Peer <yves.vandepeer@psb .vib-ugent.be> To sophie.rozenfeld(a)bayercropscience.com 02/02/2009 05:58 PM cc Subject Re: VIB Bayer BioInf meeting... sophie.rozenfeld(a)bayercropscience.com wrote: > Would April 6th, 7th or 9th ok for you ? > Sophie. > Dear Sophie, I guess so. Not everyone will be able to attend, but most people will. Will you propose a date? Thanks, Yves -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/ ________________________________________________________________________ The information contained in this e-mail is for the exclusive use of the intended recipient(s) and may be confidential, proprietary, and/or legally privileged. Inadvertent disclosure of this message does not constitute a waiver of any privilege. If you receive this message in error, please do not directly or indirectly use, print, copy, forward, or disclose any part of this message. Please also delete this e-mail and all copies and notify the sender. Thank you. For alternate languages please go to http://bayerdisclaimer.bayerweb.com ________________________________________________________________________ -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] [Fwd: Brief Bioinform Advance Access for 6 Mar 2009]
by Tom Michoel 09 Mar '09

09 Mar '09

paper 1 & 4 are mildly interesting. -------- Original Message -------- Subject: Brief Bioinform Advance Access for 6 Mar 2009 Date: Fri, 6 Mar 2009 21:15:46 -0800 From: oxfordjournals-mailer(a)alerts.stanford.edu To: <tom.michoel(a)psb.ugent.be> Brief Bioinform </> JOURNAL HOME </> HELP </help/> FEEDBACK </cgi/feedback> SUBSCRIPTIONS </subscriptions/> ARCHIVE </archive/> SEARCH </search.dtl> SEARCH RESULT </cgi/search?> */QUICK/ SEARCH: * [advanced] </search.dtl> Author: Keyword(s): Year: Vol: Page: ------------------------------------------------------------------------ OUP <http://services.oxfordjournals.org/cgi/tslogin?url=http%3A%2F%2Fwww.oxfordj…> *Briefings in Bioinformatics Advance Access Alert* New Briefings in Bioinformatics Advance Access articles have been made available (for the period 23 Feb 2009 to 6 Mar 2009): ------------------------------------------------------------------------ *Papers* ------------------------------------------------------------------------ Computational systems biology of the cell cycle Attila Csikász-Nagy Brief Bioinform published 6 March 2009, 10.1093/bib/bbp005 http://bib.oxfordjournals.org/cgi/content/abstract/bbp005v1 <http://bib.oxfordjournals.org/cgi/content/abstract/bbp005v1?papetoc> A survey of available tools and web servers for analysis of protein–protein interactions and interfaces Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, and Ruth Nussinov Brief Bioinform published 24 February 2009, 10.1093/bib/bbp001 http://bib.oxfordjournals.org/cgi/content/abstract/bbp001v1 <http://bib.oxfordjournals.org/cgi/content/abstract/bbp001v1?papetoc> Towards pharmacogenomics knowledge discovery with the semantic web Michel Dumontier and Natalia Villanueva-Rosales Brief Bioinform published 24 February 2009, 10.1093/bib/bbn056 http://bib.oxfordjournals.org/cgi/content/abstract/bbn056v1 <http://bib.oxfordjournals.org/cgi/content/abstract/bbn056v1?papetoc> A roadmap of clustering algorithms: finding a match for a biomedical application Bill Andreopoulos, Aijun An, Xiaogang Wang, and Michael Schroeder Brief Bioinform published 24 February 2009, 10.1093/bib/bbn058 http://bib.oxfordjournals.org/cgi/content/abstract/bbn058v1 <http://bib.oxfordjournals.org/cgi/content/abstract/bbn058v1?papetoc> ------------------------------------------------------------------------ This message was sent to tom.michoel(a)psb.ugent.be. *Unsubscribe* <http://bib.oxfordjournals.org/cgi/alerts/etoc?action=unsubscribe> from or *edit* <http://bib.oxfordjournals.org/cgi/alerts/etoc> your subscription for this service. Or by mail: Customer Service * 1454 Page Mill Road * Palo Alto, CA 94304 * U.S.A. ------------------------------------------------------------------------ JOURNAL HOME </> HELP </help/> FEEDBACK </cgi/feedback> SUBSCRIPTIONS </subscriptions/> ARCHIVE </archive/> SEARCH </search.dtl> SEARCH RESULT </cgi/search?> *Copyright © 2009 Oxford University Press. </misc/terms.dtl>* -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] GeNGe: Systematic Generation of Gene Regulatory Ne...[Bioinformatics. 2009] - PubMed Result
by Yves Van de Peer 08 Mar '09

08 Mar '09

http://www.ncbi.nlm.nih.gov/pubmed/19251773?dopt=Abstract -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] meeting postponed
by Eric Bonnet 06 Mar '09

06 Mar '09

hi there, It's time again for our sysbiol chat, but I have another meeting this afternoon, so I would prefer to postpone our usual meeting to next week. Eric

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