August 2010 - beg-sysbiol@psb.ugent.be

[Beg-sysbiol] (no subject)
by Yves Van de Peer 30 Aug '10

30 Aug '10

Dear all, Could you please let me know who would like to join for lunch with Ron Shamir, this Wednesday? Thanks, Yves -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Associate Department Director, VIB Department of Plant Systems Biology Group Leader Bioinformatics and Systems Biology Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] Ron Shamir visiting September 1st
by Yves Van De Peer 23 Aug '10

23 Aug '10

Dear all, Ron Shamir will visit September 1st and I hope you can all be there! Thanks in advance. Yves

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Re: [Beg-sysbiol] Cross Species Queries of Large Gene Expression Databases
by Yves Van De Peer 19 Aug '10

19 Aug '10

Zou me niet te veel zorgen maken hoor, alles zou duidelijk moeten zijn, zeg dat maar ... Sukses ----- Original Message ----- From: beg-sysbiol-bounces(a)psb.vib-ugent.be <beg-sysbiol-bounces(a)psb.vib-ugent.be> To: beg-sysbiol(a)psb.vib-ugent.be <beg-sysbiol(a)psb.vib-ugent.be> Sent: Thu Aug 19 09:46:40 2010 Subject: Re: [Beg-sysbiol] Cross Species Queries of Large Gene Expression Databases Tom, er heeft een student een vraag over de 2e vraag van HMMs, kan jij even komen ? Tom Michoel wrote: > <http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq451v1?etoc> > -- ================================================================== Dr. Yvan Saeys, PhD DEPARTMENT OF PLANT SYSTEMS BIOLOGY Fax:32 (0)9 331 38 09 BIOINFORMATICS TEAM Tel:32 (0)9 331 36 95 GHENT UNIVERSITY, Technologiepark 927, B-9052 Gent, Belgium Vlaams Instituut voor Biotechnologie VIB mailto:yvan.saeys@ugent.be http://bioinformatics.psb.ugent.be/ http://www.psb.ugent.be/~yvsae/ ================================================================== _______________________________________________ Beg-sysbiol mailing list Beg-sysbiol(a)psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/beg-sysbiol

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[Beg-sysbiol] Cross Species Queries of Large Gene Expression Databases
by Tom Michoel 19 Aug '10

19 Aug '10

<http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq451v1?etoc> -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] Dream-5
by Yvan Saeys 19 Aug '10

19 Aug '10

I was wondering if anyone is submitting something for the Dream-5 challenge ? best regards, yvan -- ================================================================== Dr. Yvan Saeys, PhD DEPARTMENT OF PLANT SYSTEMS BIOLOGY Fax:32 (0)9 331 38 09 BIOINFORMATICS TEAM Tel:32 (0)9 331 36 95 GHENT UNIVERSITY, Technologiepark 927, B-9052 Gent, Belgium Vlaams Instituut voor Biotechnologie VIB mailto:yvan.saeys@ugent.be http://bioinformatics.psb.ugent.be/ http://www.psb.ugent.be/~yvsae/ ==================================================================

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[Beg-sysbiol] tomorrow
by Eric Bonnet 16 Aug '10

16 Aug '10

hi there, Hope some of you guys will be around tomorrow (or is it *really* a f.. vacation you-know-what), I'll make a brief appearance in the lab (masc meeting scheduled). e.

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[Beg-sysbiol] [Fwd: A reminder for abstract submission for the 3rd annual joint conference on SB, RG, and DREAM]
by Tom Michoel 09 Aug '10

09 Aug '10

Another one, with incompatible dates ... -------- Original Message -------- Subject: A reminder for abstract submission for the 3rd annual joint conference on SB, RG, and DREAM Date: Mon, 09 Aug 2010 08:14:05 -0600 From: Zhong Li <events(a)regonline.com> Reply-To: Zhong Li <zli(a)c2b2.columbia.edu> To: tom.michoel(a)psb.ugent.be Dear Colleagues, Hope this message finds you well. With the abstract submission and early registration deadline a month away for the 3rd annual joint conference on systems biology, regulatory genomics, and reverse engineering challenges (http://recombsat.c2b2.columbia.edu/) please allow me to send you this reminder to register for the meeting and to submit an abstract for consideration for oral presentation or poster. You can register for the meeting, held at Columbia University on November 16-20, 2010, and submit abstract at http://www.regonline.com/recombsat10. A template for abstract is at http://recombsat.c2b2.columbia.edu/?q=node/6. Please note that both abstract submission and early registration end on September 6^th , 2010. This year we again tried to keep the meeting registration fee manageable for all participants. Daily breakfast and lunch are included in the registration fee. Early registration provides additional saving to attend the meeting. Best, Zhong Zhong Li, Ph.D. Chair, Local Organizing Committee Columbia University On behalf of Conference Chairs: Regulatory Genomics: Manolis Kellis (MIT), Ziv Bar-Joseph (CMU). Systems/DREAM: Andrea Califano (Columbia), Gustavo Stolovitzky (IBM). This email communication was sent by: C2B2 Columbia University 1130 St. Nicholas Ave. New York, NY 10032 To unsubscribe, click here <https://www.regonline.com/t/u.aspx?e=9&p=147007&a=50955167>. -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] [Fwd: Submit your abstract: From Functional Genomics to Systems Biology, 13 - 16 Nov 2010]
by Tom Michoel 09 Aug '10

09 Aug '10

Interesting conference ... -------- Original Message -------- Subject: Submit your abstract: From Functional Genomics to Systems Biology, 13 - 16 Nov 2010 Date: Sat, 7 Aug 2010 22:54:44 +0200 From: EMBL Conferences <events(a)embl-events.de> Organization: EMBL To: tom.michoel <tom.michoel(a)psb.ugent.be> Dear Colleagues, The registration and abstract submission deadline will close on *15 August* for the *EMBO Conference Series*:* From Functional Genomics to Systems Biology, 13** - 16 November 2010* which will take place in Heidelberg, Germany at the EMBL Advanced Training Centre <http://www.embl.de/atc>. Please check the conference website for more information: www.embl.de/events/2010/OMX10-01 <http://www.embl.de/events/2010/OMX10-01> Registration is on a *first-come, first-served basis.* Registration and abstract deadline: * 15 August 2010* There are a limited number of *fellowships* available and you will find further information on the website <http://www.embl.de/events/2010/OMX10-01>. The past decade has seen an exponential growth in genome-wide data measuring diverse cellular parameters, such as TF binding, gene expression, translation, protein abundance, protein-protein interactions, and genetic phenotypic interaction. In order to gain a systems level understanding of a given process, cell or organism, the current challenge is to convert these static qualitative maps into dynamic quantitative models of cellular processes. This rather daunting task can only be achieved through a multidisciplinary approach, which requires intensive integration of technology and thinking from many diverse fields, including basic biology, genomics, computational biology, mathematics, engineering and physics. The main objective of this conference is to bring people together from these diverse disciplines to exchange ideas, promote cross-disciplinary collaborations and to form a synthesis of appropriate systems-level approaches. The meeting will cover all aspects of functional genomic approaches to systems biology, going from the genome to phenotype. These include transcriptional networks, protein interaction networks, functional interaction networks (synthetic lethal screens, genetics, RNAi), synthetic biology, multi-dimensional data integration and qualitative and quantitative modelling. This broad scope has been the format of this meeting every since it was initiated in 2002. The meeting has since been held every two-years, with the 2010 meeting being the fifth biennial meeting. You are welcome to circulate this announcement to interested members and groups within your institute. If you have any questions, please do not hesitate to contact me. Kind regards, Bettina Bettina Schaefer Senior Conference Officer European Molecular Biology Laboratory Meyerhofstr. 1 D-69117 Heidelberg Tel: +49-6221-387 8836 Fax: +49-6221-387 8158 Email: schaefer(a)embl.de <mailto:schaefer@embl.de> Please visit www.embl.org/events <http://www.embl.org/events> for a complete list of all EMBL events Please subscribe at www.embl.de/events/newsletter <http://www.embl.de/events/newsletter> for our newsletter Follow us on www.twitter.com/embl_events <http://www.twitter.com/embl_events> and www.friendfeed.com/embl <http://www.friendfeed.com/embl> If you do not like to receive any further EMBL events announcements, please reply with "unsubscribe" in the subject. -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] Using heterogeneous data sources in a systems biol... [Mol Biosyst. 2010] - PubMed result
by Yves Van de Peer 01 Aug '10

01 Aug '10

http://www.ncbi.nlm.nih.gov/pubmed/20672180?dopt=Abstract -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Associate Department Director, VIB Department of Plant Systems Biology Group Leader Bioinformatics and Systems Biology Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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