- beg-sysbiol@psb.ugent.be - maillist.psb.ugent.be

[Beg-sysbiol] [Fwd: Re: Sleipnir: Main Page]
by Klaas Vandepoele 08 Dec '09

08 Dec '09

Dear, the COALESCENCE tool is available on Werewulf and Tornado. Klaas Reference: *Detailing regulatory networks through large scale data integration. * Bioinformatics. 2009 Dec 15;25(24):3267-74. Huttenhower C, Mutungu KT, Indik N, Yang W, Schroeder M, Forman JJ, Troyanskaya OG, Coller HA. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/24/3267 -- Klaas Vandepoele, PhD Tel. 32 (0)9 33 13822 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, Belgium E-mail: Klaas.Vandepoele(a)psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be/ --------------------------------------------------------- Come on out and change the world (around us)

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[Beg-sysbiol] article
by Eric Bonnet 07 Dec '09

07 Dec '09

interesting article in Wired about modeling: Modeling Human Drug Trials — Without the Human http://www.wired.com/magazine/2009/11/ff_archimedes/all/1

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[Beg-sysbiol] FINAL REMINDER!!! BITS promoting your biocomputing web-pages
by Stefanie De Bodt 04 Dec '09

04 Dec '09

I still missing most of the sysbiol tools. Thanks in advance for sending the info TODAY!! best regards, Stefanie -- ================================================================== Stefanie De Bodt, PhD VIB Department of Plant Systems Biology, UGent Technologiepark 927 B-9052 Gent Belgium Tel: 32 (0)9 3313692 Website: http://www.psb.ugent.be ==================================================================

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[Beg-sysbiol] A Systems View of Responses to Nutritional Cues in... [Plant Physiol. 2009] - PubMed result
by Yves Van de Peer 29 Nov '09

29 Nov '09

http://www.ncbi.nlm.nih.gov/pubmed/19939945?dopt=Abstract -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] paper
by Eric Bonnet 16 Nov '09

16 Nov '09

Detailing regulatory networks through large scale data integration http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp588

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[Beg-sysbiol] Systems Biology from a Yeast Omics Perspective. [FEBS Lett. 2009] - PubMed result
by Yves Van de Peer 15 Nov '09

15 Nov '09

http://www.ncbi.nlm.nih.gov/pubmed/19903479?dopt=Abstract -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] visit Rob McGill next week
by Steven Maere 09 Nov '09

09 Nov '09

Dear all, I think we should make some kind of schedule for Rob's visit to avoid that we all have to be on stand-by for the whole week or that we have to make a schedule on his time. Rob's gonna be here on Monday at 10:30, at which time we can do general introduction. If we schedule one topic (set of related systems biology tools) per half day and take Monday morning for general intro, there is Friday left for individual discussions and maybe other tools (e.g. annotation). The systems biology tools that he should have a look at in detail are listed below (please let me know if I forgot some) together with a tentative schedule and people that should be there. Let me know if the timing does not fit your schedule, or if other tools (Yvan ?) or people should be included. - Monday morning 10:30 : general intro - Monday afternoon: LeMoNe and spinoffs Tom, Eric, Anagha, Vanessa, Nathalie, (Steven?) - Tuesday morning: CORNET Stefanie, ? - Tuesday afternoon: ENIGMA Steven - Thursday morning: PLAZA, AtCoecis Klaas, Sebastian, ? - Thursday afternoon: Cytoscape plugins: BiNGO, Mint, Pathicular, plugin of Jens with Kris Laukens ? Steven, Tom, Jens, Anagha Does this sound like a plan ? Steven ================================================================== Steven Maere, PhD Group leader, Evolutionary Systems Biology group Dept. of Plant Systems Biology VIB / Ghent University Technologiepark 927 B-9052 Gent BELGIUM tel: +32 9 331 3810 fax: +32 9 331 3809 email: stmae(a)psb.vib-ugent.be http://www.psb.ugent.be/esb/ ==================================================================

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[Beg-sysbiol] [Fwd: Meetings]
by Tom Michoel 06 Nov '09

06 Nov '09

Just a confirmation that we'll go ahead with the half day per topic schedule next week. Tom -------- Original Message -------- Subject: Meetings Date: Fri, 6 Nov 2009 15:26:01 +0000 From: robertgill66(a)googlemail.com Reply-To: robertgill66(a)googlemail.com To: tom.michoel(a)psb.vib-ugent.be Tom. Appologies for the strange mail but am on the move today. Think the idea of half days on each topic is excellent ! Feel free to get everyone who wants to be involed booked up for each of the sessions you suggested and we can start from there. Thanks for all the support on this Rob. -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] let's have a meeting now?
by Yves Van de Peer 05 Nov '09

05 Nov '09

-- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] (no subject)
by Yves Van de Peer 03 Nov '09

03 Nov '09

Dear all, I completely forgot I have OC meeting tomorrow afternoon (Hooray!) at 4pm. Therefore, I'm afraid we have to postpone our meeting to Thursday 4pm. Ok for everyone? Thanks, Yves -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be/

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