- beg-sysbiol@psb.ugent.be - maillist.psb.ugent.be

[Beg-sysbiol] [Fwd: meeting]
by Yves Van de Peer 11 May '08

11 May '08

-------- Original Message -------- Subject: meeting Date: Mon, 28 Apr 2008 22:48:11 +0200 From: Rudy Dekeyser <Rudy.Dekeyser(a)vib.be> To: Yves Van de Peer <yves.vandepeer(a)psb.ugent.be> CC: Barbara Leyman <Barbara.Leyman(a)vib.be> Yves, Zoals vanavond gevraagd : kun jij een aantal data doorgeven waarop barbara en ik ‘ns knn langskomen om de ‘system biology’ software te “zien werken”. Email je ons ook ‘ns de (twee?) publicatie(s) waarin de materie wordt beschreven? Dank,rudy -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] @meeting
by Eric Bonnet 09 May '08

09 May '08

hi there, I have a flex-flex-ware meeting this morning in gent, so cu guys this afternoon.. Eric

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[Beg-sysbiol] (no subject)
by Yves Van de Peer 08 May '08

08 May '08

Dear all, We still need to think about who to invite for seminars (Greg, let's think/talk about this some day soon, we have a list), but we also need to invite someone for the annual Departmental meeting, which will take place in December. Could you guys think about which 'hotshot' might be good to ask for the meeting. Preferably someone who can talk about Systems Biology but from a general point of view so that it is of interest to the whole group. Could you discuss this and send me some names so I can get in touch with these people and ask them whether they'd be interested in visiting our Institute. Thanks, Yves -- Yves Van de Peer, PhD. Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer(a)psb.ugent.be http://bioinformatics.psb.ugent.be/

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[Beg-sysbiol] @home (fwd)
by Kenny Billiau 08 May '08

08 May '08

This didn't get through on the maillist: -- ---------- Forwarded message ---------- Date: Thu, 08 May 2008 09:50:55 +0200 From: Eric Bonnet <erbon(a)psb.ugent.be> To: beg-sysbiol(a)psb.ugent.be Subject: @home hi there, I've got some papers to read, i'll stay at home this morning. cu, Eric

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[Beg-sysbiol] ENFIN-DREAM conference Madrid
by Tom Michoel 30 Apr '08

30 Apr '08

Hi all, Just a few points to remember from the ENFIN-DREAM conference (<http://www.enfin.org/page.php?page=enfin_dream>) I attended this week: - ENFIN seems like a very succesful network: partners really share data and collaborate on various projects. If there's a successor to this project, we should try to be part of it. Let's get ourself known to these people, perhaps by inviting some for a seminar? - There will be a DREAM3 conference in Boston end of october/early november 2008. New challenges will also feature model based inference (predicting behavior of unseen data) which is good news for us. The conference will be organized back-to-back with a recomb sysbiol satellite meeting and another meeting organized by Manolis Kellis. - A few talks mentioned "method integration" as we have discussed here as well (to integrate results from enigma and lemone), so this is certainly a topic of interest right now. They used a simple approach of converting all predictions of different methods as p-values which can be combined in weighted sums by the method of <http://www.pnas.org/cgi/content/abstract/102/48/17296>. - Jaak Vilo talked about a method to predict new genes participating in known pathways by overlaying them with expression data (an extension of their tool KEGGanim <http://biit.cs.ut.ee/kegganim/>). They used a completely trivial method (pairwise Pearson correlations with genes in the pathway). I have the feeling it's very easy to improve by modeling the condition dependent expression of genes in a pathway using our tools and then compute the probability for new genes to belong to that pathway. This might be a good project for a new phd student, e.g. focused on combining our arabidopsis expression data with the pathways in reactome. Leuven is also interested in these kind of things. - For Sofie: do you know the BioCreative text mining competitions? <http://www.pdg.cnb.uam.es/BioLINK/BioCreative.eval.html> <http://biocreative.sourcefourge.net> Might be good to participate in the next one to promote genefetch. If you want to know more about specific talks, take a look at the program and ask me. Tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] [Fwd: ENFIN / Second Advanced Course on Systems Modeling - Paris-Cachan July 8-10]
by Tom Michoel 30 Apr '08

30 Apr '08

A free course in Paris, recommended. Tom -------- Original Message -------- Subject: ENFIN / Second Advanced Course on Systems Modeling - Paris-Cachan July 8-10 Date: Tue, 29 Apr 2008 16:26:40 +0100 From: Pascal Kahlem <pkahlem(a)ebi.ac.uk> To: Ana Rojas Mendoza <arojas(a)cnio.es>, crosales(a)cnio.es, Martin Krallinger <mkrallinger(a)cnio.es>, Ildefonso Cases <icases(a)cnio.es>, ranea(a)uma.es, dicamill(a)dei.unipd.it, tom.michoel(a)psb.ugent.be, Kathleen Marchal <kathleen.marchal(a)biw.kuleuven.be>, medina(a)uma.es, Mario Lauria <lauria(a)tigem.it>, Hui Zhao <hui.zhao(a)biw.kuleuven.be>, Francesco Iorio <iorio(a)tigem.it>, Belcastro Vincenzo <belcastro(a)tigem.it>, Tim Van den Bulcke <tim.vandenbulcke(a)esat.kuleuven.be>, Layka Abbasi <laykaabbasi(a)gmail.com>, Hedi Peterson <peterson(a)quretec.com>, Robert Rentzsch <rentzsch(a)biochem.ucl.ac.uk>, manickam.muthuraman(a)med.ovgu.de, Alberto de la Fuente <alf(a)crs4.it>, alessio_cardin(a)hotmail.it, dixonp(a)maths.ox.ac.uk, skalko(a)clinic.ub.es, vedrana tabor <v.tabor(a)googlemail.com> Dear colleagues, This is the announcement of the Second Advanced Course on Systems Modeling - Paris-Cachan, organized in July 8-10 by the European Networks of Excellence ENFIN and hosted at the Ecole Normale Supérieure in Paris-Cachan. The program of the course is now available at: http://www.enfin.org/page.php?page=ENS_course This Advanced Course will host a maximum of 20 students, having already a background in bioinformatics. >>>> All costs will be covered by the European network ENFIN, except travel costs. <<<<< Applicants should register online before June 15, 2008, after-what the final list of students will be established. Please spread this announcement around. Kind regards, Pascal ________________________________________________________________________ _ Dr. Pascal KAHLEM Project Manager European Network of Excellence ENFIN on Systems Biology - www.enfin.org EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom Line +44(0)1223492588 / Mob +49(0)15209854747 / Fax +44(0)1223494468 Email: pkahlem(a)ebi.ac.uk Skype: pascalkahlem ________________________________________________________________________ _ -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] @home
by Eric Bonnet 24 Apr '08

24 Apr '08

hi there, I'm a little bit sick so I'll keep my microbes for me, see you guys on monday! Eric

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[Beg-sysbiol] late again tomorrow
by Tom Michoel 17 Apr '08

17 Apr '08

Another appointment at the hospital at 10:15, now to see the pictures they took last week of my shoulder. Tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>

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[Beg-sysbiol] not recovered as well as I thought -> working at home today
by Steven Maere 16 Apr '08

16 Apr '08

-- ================================================================== Steven Maere, PhD Dept. of Plant Systems Biology Bioinformatics & Evolutionary Genomics research group VIB / Ghent University Technologiepark 927 B-9052 Gent BELGIUM tel: +32 9 331 3810 fax: +32 9 331 3809 email: stmae(a)psb.UGent.be http://www.psb.UGent.be http://bioinformatics.psb.ugent.be/ ==================================================================

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[Beg-sysbiol] Re: for gardeners
by Steven Maere 14 Apr '08

14 Apr '08

Ping, I can give a good home to all your plants if you don't find any other volunteers. My internet just started working again, I'm ill and at home, but I'll probably be back tomorrow. Steven Eric Bonnet wrote: > For the (lucky) people who owns a garden or even a terrasse we have a > couple of plants that we would give for free: > > - An apple-tree (1m) the decorative one, actually not producing apples > but a lot of flowers in spring. > - An hortensia (Hydrangea macrophylla), 80 cm > - 2 small Buxus (in pots, at the moment) 60 cm > - 1 snowball tree ~1m http://en.wikipedia.org/wiki/Viburnum_opulus > > Please ping me if you're interested by any of those.. > > Eric -- ================================================================== Steven Maere, PhD Dept. of Plant Systems Biology Bioinformatics & Evolutionary Genomics research group VIB / Ghent University Technologiepark 927 B-9052 Gent BELGIUM tel: +32 9 331 3810 fax: +32 9 331 3809 email: stmae(a)psb.UGent.be http://www.psb.UGent.be http://bioinformatics.psb.ugent.be/ ==================================================================

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