For me, any time on monday or tuesday is fine. How about tuesday around 11am? Tom On 20 Dec 2008, at 11:04, Yves Van de Peer wrote:
Ben Mahy wrote:
Ikke
-----Original Message----- From: beg-sysbiol-bounces@psb.ugent.be [mailto:beg-sysbiol-bounces@psb.ugent.be] On Behalf Of Tom Michoel Sent: vrijdag 19 december 2008 10:38 To: beg-sysbiol@psb.ugent.be; Thomas Van Parys Subject: [Beg-sysbiol] cytoscape plugin demo
Hi all,
Thomas has more or less finished the cytoscape plugin for running the network motif clustering algorithms I talked about at the lunch meeting recently. What remains to be done is mainly to polish and extend the user interface, hopefully based on feedback from some of you.
Who wants to see a demo and when?
If you can't wait to try it, I installed a version of cytoscape with the plugin in /group/sysbiol/cytoscape-v2.6.1. Three things are important: you need to have matlab installed, set the correct library path and run cytoscape using java 1.6. On midas/tornado/ smokey you're all set if you use the commands in /group/sysbiol/ cytoscape-v2.6.1/motifClustHelp.txt.
Tom
me too
-- Yves Van de Peer, PhD.
Professor in Bioinformatics and Genome Biology Group Leader Bioinformatics and Evolutionary Genomics VIB Department of Plant Systems Biology, UGent Ghent University Technologiepark 927 B-9052 Ghent Belgium
Phone: +32 (0)9 331 3807 Cell Phone: +32 (0)476 560 091 Fax: +32 (0)9 331 3809 email: yves.vandepeer@psb.ugent.be
http://bioinformatics.psb.ugent.be/
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