Dear all, After a few modifications to BiNGO.java and Module.java, removing all annoying GUI stuff, our program can now run in headless mode on the cluster nodes... I added RunHeadless.java in the repository (Release1 branch). However, I couldn't commit the other modified .java files (so it won't work yet), I got svn 'out of date' errors while the files were minutes old. Eric, any ideas ? Also, Tom, should I commit the modified TreeNode.java (for handling the NaN's) and ModuleNetwork.java (there was still this bit of code for handling the CS module overlap in there) to Release1 or not, what do you think ? And are there any other changes to the trunk code that should be added to Release1 (to avoid having versions that diverge too much) ? Cheers, Steven -- ================================================================== Steven Maere, PhD Dept. of Plant Systems Biology Bioinformatics & Evolutionary Genomics research group Ghent University / VIB Technologiepark 927 B-9052 Gent BELGIUM tel: +32 9 331 3692 fax: +32 9 331 3809 email: stmae@psb.UGent.be http://www.psb.UGent.be http://bioinformatics.psb.ugent.be/ ==================================================================