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From: Jonathan Rogge <Jonathan.Rogge@UGent.be> Date: Fri 5 Feb 2010 09:59:33 GMT+01:00 To: yvpee@psb.ugent.be, Dirk.Inze@UGent.be, tomic@psb.ugent.be, krwab@psb.ugent.be , martin.kuiper@psb.ugent.be, researchers@systems.ugent.be Subject: [SYSTeMS dialogues] Lecture on Genetic regulatory networks
Dear colleagues,
I would like to invite you to the following SYSTeMS Dialogue. The talk will take place in the SYSTeMS classroom (Technologiepark Zwijnaarde 914, 2nd floor) on Wednesday, February 24th, at 2pm. It will be given by Dirk De Vos, researcher at the Centrum Wiskunde en informatica in Amsterdam. Title and abstract of the presentation are included below. Feel free to inform fellow researchers which might be interested in this talk.
Kind regards, Jonathan Rogge
--- ABSTRACT Title: Modeling and Identification of Genetic Regulatory Networks Programming Erythropoiesis
The development of mature blood cells of distinct lineages from multipotent stem cells (hematopoiesis) involves a progressive restriction of differentiation potential and the establishment of lineage-specific gene expression profiles. The establishment of these profiles relies on lineage-specific transcription factors to modulate the expression of their target genes [1]. This work is embedded in a wider ErasmusMC/CWI collaboration that develops the informatics and mathematics to underpin studies on gene expression regulation by mapping and analysing the regulatory pathways and networks of transcription factors that control cellular functions (so called "Gene Regulatory Networks" or "GRN’s"). This project is concerned with the mathematical part and concentrates on a GRN central to erythropoiesis. Among the many housekeeping and tissue- specific genes involved in the dfferentiation and the commitment of haematopoietic stem cells to erythrocytes (erythropoiesis), we focus on a small pool of genes (Gata-1, Gata-2, Pu.1, EKLF, FOG-1, α/ β -globin) known to be critically involved in an intricate but well-less investigated regulatory circuit.
Based on the regulatory interactions in the GRN we have developed a model in the form of a system to account for the dynamics of gene expression and regulation involved in this process. Time series of the levels of all relevant mRNA’s are available from micro-array analysis of G1E cells, a murine cell line which recapitulates erythropoiesis. Because of the lack of information about a significant number of model parameters, our focus is on system identification.
This will eventually allow for a thorough analysis of the role of various characterized as well as hypothetical regulatory mechanisms. In depth characterization of the necessary expression patterns and gene regulatory interactions responsible for the the set of commitments all along the erythroid lineage is essential to gain fundamental insight into the behaviour of these complex networks and to design further experiments. Ultimately, this may lead to ways to rescue erythroid differentiation in several anemic diseases.
[1] G Swiers, R Patient and M Loose. Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification. Dev. Biol, 294, 2006.
-- Tom Michoel <http://www.psb.ugent.be/~tomic/>