Hi, With the latest LeMoNe code and no other jobs running on tornado, 4 runs were finished in about 5 days. Now we need some basic analysis to see if anything cell-cycle related is showing up ... then we can play with some parameters to see how they affect results. For the experienced people, the output is here: /group/biocomp/projects/segal/tomic/LeMoNe/results/Arabidopsis/20071023 xml/ : use -Xmx7000m to read these figs/ : figures for all modules, separated for each of the runs figs2/ : figures ranked by edge weight (using "max") figs3/ : figures ranked by edge weight (using "sum") 20071023_edges_max_ranked.txt, 20071023_edges_sum_ranked.txt : networks ranked by edge weight (using both ways to compute edge weights) 20071023_edges_1000.cys : cytoscape file with best 1000 edges for both networks moduleSet_##.txt : gene clusters for each run. Tom -- Tom Michoel <http://www.psb.ugent.be/~tomic/>