Hi Vanessa and co,

some suggestions:

slide 4-5. I would mention the recently published AraNet from Sue Rhee as well (http://www.ncbi.nlm.nih.gov/pubmed/20118918) since it partially overlaps with the objectives of slide 4 (cfr. slide last year).
slide 28. I would add these 3 references:

Stuart et al., 2003 Science (http://www.ncbi.nlm.nih.gov/pubmed/12934013)
Kelley et al., 2004 PathBLAST Ideker/Sharan lab (http://www.ncbi.nlm.nih.gov/pubmed/15215356)
Bergmann et al., 2004 (http://www.ncbi.nlm.nih.gov/pubmed/14737187)

slide 29.

Are studies describing TF-target evolution using ChIP experiments for an orthologous TF in closely related species also relevant? Or are these to local (i.e. not whole network level) E.g. http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0060038 (i.e. comparative regulatory genomics)
It would be great (possible?) to do this in the SYSFLO context as well (flowering network)?

Good slides for some fruitful discussions :-)

best,
Klaas

Vanessa Vermeirssen wrote:

Hi all,

these are the slides for the data integration on network modelling session.
Please, send all your comments to Yvan and me before tuesday (the sooner the better).

Thanks!
Vanessa

Subject:
slides data integration

From:
Yvan Saeys <yvan.saeys@psb.ugent.be>

Date:
Fri, 21 May 2010 16:29:41 +0200

To:
Vanessa Vermeirssen <vanessa.vermeirssen@psb.ugent.be>, Stefanie De Bodt <stefanie.debodt@psb.vib-ugent.be>, Yvan Saeys <yvan.saeys@psb.vib-ugent.be>

To:
Vanessa Vermeirssen <vanessa.vermeirssen@psb.ugent.be>, Stefanie De Bodt <stefanie.debodt@psb.vib-ugent.be>, Yvan Saeys <yvan.saeys@psb.vib-ugent.be>
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