June 2010 - binari@psb.ugent.be - maillist.psb.ugent.be

Re: [Binari] Next departmental get-together on July 2, 2010
by Thomas Van Parys 29 Jun '10

29 Jun '10

Op 29-06-10 15:47, Hilde Diegenant schreef: > Dear all : > > Please *collect the BBQ coupons* of your choice before Friday noon in my > office. > > There are coupons for meat, fish or vegetarian. > > Without a coupon, unfortunately the catering company will not be able to > provide food for you. > > The catering company foresees *one plate, fork and knife per person*. > You can serve twice but need to use the same plate, fork and knife. And what about napkins? T. > > Dear all : > > It is my great pleasure to invite you on *Friday July 2, 2010* for a > barbecue organized by our Department. > > First a brief presentation will be given at 5 PM in the Auditorium. > > Registration is obligatory. Please register before Friday June 18, 2010 > by sending an email to Hilde (hidie(a)psb.vib-ugent.be > <mailto:hidie@psb.vib-ugent.be>). > > * * > -- ================================================================== Thomas Van Parys Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM thomas.vanparys(a)psb.vib-ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] Fwd: Looking for J2301 and J2672
by Marijn Vandevoorde 29 Jun '10

29 Jun '10

always happy to help out a colleague -------- Original Message -------- Subject: Looking for J2301 and J2672 Date: Tue, 29 Jun 2010 09:45:34 +0200 From: Veronique Boudolf <vebou(a)psb.vib-ugent.be> To: research(a)psb.ugent.be Dear all, I am looking for 2 Haseloff GAL4-GFP lines: J2301 (atrichoblast specific) and J2672 (endodermis specific). I only need a couple of seeds for transformation...Anybody? Greetings, Vero -- ================================================================== Véronique Boudolf, PhD Tel:+32 (0)9 331 39 64 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM vebou(a)psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================

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[Binari] [Fwd: Re:Re: Fw: A PHD student using splice machine]
by Michiel Van Bel 28 Jun '10

28 Jun '10

*sigh* sometimes I really want to tell those guys to a) follow a decent english course b) read the fucking manual I mean, it's not that difficult to read your email again before you send it, and make sure it makes sense :-( ---------------------------- Original Message ---------------------------- Subject: Re:Re: Fw: A PHD student using splice machine From: ¿µÑ©æ¯ <kxj19840724(a)126.com> Date: Sun, June 27, 2010 4:14 am To: "Michiel Van Bel" <michiel.vanbel(a)psb.vib-ugent.be> -------------------------------------------------------------------------- Dear Michiel Thanks for your help! I have tried to predict my test file using the software but the annotation file can be downloaded,why? Best regards! Xuejiao >ok, >the software available on the website is only trained for Arabidopsis >and Human. >So you can only use a test-file (in fasta format). The output-format is >described here: >http://bioinformatics.psb.ugent.be/webtools/splicemachine/help/ > >In order to train splicemachine yourself, you'll have to use the offline >installation (see attachment). >However, as I didn't write the software, I do not think I can really >help you any further with any questions considering training >splicemachine yourself. Please have a look at the pdf-files included in >the attachment, for any further instructions. > >Michiel > > > > >¿µÑ©æ¯ wrote: >> Hi Michieal >> Thanks for your reply! >> Here I want to know how to run the software.To the inputing file, how >> to distinguish the training file and the testing file?or the all the >> data should be in one file?Then how to distinguish the true or false >> sites? >> Thanks a lot! >> Regards! >> Xuejiao >> >> >> >Hi Kang, >> >you can run the splicemachine software at this location: >> >http://bioinformatics.psb.ugent.be/webtools/splicemachine/ >> > >> >Just copy-paste the sequences in fasta format into the text-field, and >> >press the "run splicemachine" button. >> > >> >kind regards, >> >Michiel >> > >> > >> > >> >Yves Van De Peer wrote: >> >> >> >> ------------------------------------------------------------------------ >> >> *From*: ¿µÑ©æ¯ <kxj19840724(a)126.com> >> >> *To*: yves.vandepeer(a)psb.vib-ugent.be <yves.vandepeer(a)psb.vib-ugent.be> >> >> *Sent*: Fri Jun 25 08:31:52 2010 >> >> *Subject*: A PHD student using splice machine >> >> >> >> Dear Professor >> >> I'm a PHD student doing research in splice sites prediction >> >> and I have read your article"Splice Machine: predicting splice sites >> >> from high-dimensional local context representations". Now I want to do >> >> some comparisons on NN269 acceptor datasets, but I don't know how to >> >> use the software(how to do prediction). Would you like to tell me the >> >> details? >> >> Best wishes to you and your family! >> >> Thanks a lot! >> >> >> >> >> >> Yours sincerely >> >> Kang xuejiao >> >> >> >> >> > >> > >> >-- >> >================================================================== >> >Michiel Van Bel >> >PhD student >> >Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 >> >VIB Department of Plant Systems Biology, Ghent University >> >Technologiepark 927, 9052 Gent, BELGIUM >> >mibel(a)psb.vib-ugent.be http://www.psb.vib-ugent.be >> >http://bioinformatics.psb.ugent.be >> >================================================================== >> > >> > >> >> >> > > >-- >================================================================== >Michiel Van Bel >PhD student >Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 >VIB Department of Plant Systems Biology, Ghent University >Technologiepark 927, 9052 Gent, BELGIUM >mibel(a)psb.vib-ugent.be http://www.psb.vib-ugent.be >http://bioinformatics.psb.ugent.be >================================================================== > > -- Michiel Van Bel PhD student VIB, UGent Technologiepark 927, B-9052 GENT

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[Binari] anybody else ...
by Lieven Sterck 28 Jun '10

28 Jun '10

experiencing problems using the skynet relay.skynet.be smtp-server since update to TB2.x ?? L. -- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true" - H. Simpson

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[Binari] dad? why do we always use .NET ?
by Frederik Delaere 25 Jun '10

25 Jun '10

http://www.youtube.com/watch?v=KrfpnbGXL70 -- ================================================================== Frederik Delaere Tel:+32 (0)9 331 38 14 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM frlae(a)psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================

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[Binari] chance computation
by Michiel Van Bel 25 Jun '10

25 Jun '10

okay, my statistics is a bit rusty (and I do not really know how to google for it), so perhaps you guys might have a hint: 1) say you have X objects (in a linear row) 2) Y of those X objects (Y <= X naturally) have some kind of special status 3) Z is a number between 0 and Y 4) What are the odds that Z objects with the special status are located next to each other For example: X=50,Y=20,Z=10 You have 50 pencils, and 20 of them are red, 30 of them are blue. What are the odds that (if you lay those 50 pencils down randomly) there are 10 red pencils next to each other? Anyone any hints? -- ================================================================== Michiel Van Bel PhD student Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM mibel(a)psb.vib-ugent.be http://www.psb.vib-ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] 't is hier zo stil?
by Sofie Van Landeghem 25 Jun '10

25 Jun '10

en dat voor een vrijdag... :p -- Sofie Van Landeghem PhD Student VIB Department of Plant Systems Biology, Ghent University Bioinformatics and Evolutionary Genomics Technologiepark 927, 9052 Gent, BELGIUM Tel: +32 (0)9 331 36 95 fax:+32 (0)9 3313809 Website: http://bioinformatics.psb.ugent.be

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[Binari] die morgen in uw krant
by Sofie Van Landeghem 25 Jun '10

25 Jun '10

de IT specialist is nog niet wakker. -- Sofie Van Landeghem PhD Student VIB Department of Plant Systems Biology, Ghent University Bioinformatics and Evolutionary Genomics Technologiepark 927, 9052 Gent, BELGIUM Tel: +32 (0)9 331 36 95 fax:+32 (0)9 3313809 Website: http://bioinformatics.psb.ugent.be

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[Binari] the most bizarre match ever
by Frederik Delaere 23 Jun '10

23 Jun '10

http://en.wikipedia.org/wiki/Shell_Caribbean_Cup_1994#Anomaly fun fun fun <http://en.wikipedia.org/wiki/Shell_Caribbean_Cup_1994#Anomaly> -- ================================================================== Frederik Delaere Tel:+32 (0)9 331 38 14 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM frlae(a)psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================

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[Binari] Fwd: RE: pdf
by Lieven Sterck 23 Jun '10

23 Jun '10

someone? actually: iemand? (it's in dutch) .... -------- Original Message -------- Subject: RE: pdf Date: Wed, 23 Jun 2010 14:06:52 +0200 From: Nathalie Vanden Hautte <nahau(a)psb.vib-ugent.be> To: Lieven Sterck <lieven.sterck(a)psb.vib-ugent.be> Bjorn heeft standaard labels gemaakt om te printen, opent in PDF. Maar komt niet overeen met formaat van labels die ik heb. Ben ik al duidelijker? J *From:* Lieven Sterck [mailto:lieven.sterck@psb.vib-ugent.be] *Sent:* woensdag 23 juni 2010 14:05 *To:* Nathalie Vanden Hautte *Subject:* Re: pdf euuuhhhhmmmm ... :-/ msschn ietskes meer uitleg nodig ;-) On 23/06/2010 14:03, Nathalie Vanden Hautte wrote: Lieven, hoe moet ik het formaat van een label aanpassen in PDF? Merci! Nathalie ____________________________________________ Nathalie Vanden Hautte /Administrative Assistant/ *VIB, Department of Plant Systems Biology* *Ghent University* Technologiepark 927 9052 Gent Belgium Phone: +32/9/33.13.800 Fax: +32/33.13.809 Http://www.psb.ugent.be nahau(a)psb.vib-ugent.be <mailto:nahau@psb.vib-ugent.be> -- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email:lieven.sterck@psb.vib-ugent.be <mailto:lieven.sterck@psb.vib-ugent.be> Website:http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true" - H. Simpson

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