- binari@psb.ugent.be - maillist.psb.ugent.be

[Binari] java classpath - pain in the ass.
by Sofie Van Landeghem 16 Oct '08

16 Oct '08

I'm always having problems with the java class path, I think I just don't really understand how it works (well, I do in theory, but that doesn't seem to help). Suppose you have an external library L, used by both project X and project Y. Project Y also uses the built jar of project X. What would be best practice for the location of library L, without me having to copy it? I think the problem is that in Netbeans, by creating the dependency between Y and X, you don't have to create an extra dependency between L and Y (it propagates). However, when running on command line, you then have a problem, and Y can't find L. sigh. Any tips? Sofie -- Sofie Van Landeghem PhD Student VIB Department of Plant Systems Biology, Ghent University Bioinformatics and Evolutionary Genomics Technologiepark 927, 9052 Gent, BELGIUM Tel: +32 (0)9 331 36 95 fax:+32 (0)9 3313809 Website: http://bioinformatics.psb.ugent.be

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[Binari] french fries aftermath
by Sebastian Proost 16 Oct '08

16 Oct '08

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[Binari] Red Queen Race
by Kenny Billiau 14 Oct '08

14 Oct '08

I knew it was from Alice in Wonderland :) "Well, in our country," said Alice, still panting a little, "you'd generally get to somewhere else - if you run very fast for a long time, as we've been doing." "A slow sort of country!" said the Queen. "Now, here, you see, it takes all the running you can do, to keep in the same place. If you want to get somewhere else, you must run at least twice as fast as that!" http://en.wikipedia.org/wiki/Red_Queen's_race -- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau(a)psb.ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] No load on midas ..
by Kenny Billiau 14 Oct '08

14 Oct '08

.. is this because Seppe is gone? [kebil@midas ~]$ uptime 11:41:08 up 6 days, 22:48, 48 users, load average: 0.07, 0.04, 0.01 -- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau(a)psb.ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] Perly perly
by Michiel Van Bel 14 Oct '08

14 Oct '08

ok people, i've got some really weird problem with perl DBI, and I cannot find out what the hell I'm doing wrong. The code is below. The executed query is a simple count, which should always return a value. You can also see the "#TESTING"-part, which returns the count immediately for testing purposes. If the "TESTING"-part is not commented out: - %test_sd returns the actual value that is stored in the database (0 or higher). Checked manually. Not a problem. If the "TESTING"-part is commented out: a) $test_count is not zero: not a problem, the program just skips the content of the if-clause b) $test_count is zero: program crashes (just says: 'error: n'). That's it :s So, anybody can see what's wrong here? Michiel my $query_count = "SELECT count(`msa`.`aln`) as count FROM `msa` WHERE `msa`.`gf_id` ='".$gf_id."' ;"; my $rt_count = $dbh->prepare($query_count); my $dbi_ret_count = $rt_count->execute(); if(!$dbi_ret_count){ my %retval = ("error"=>"No valid database connection"); return \%retval; } my @res_count = $rt_count->fetchrow_array; my $test_count = @res_count[0]; my %test_sd = ("count result"=>$test_count); #TESTING return \%test_sd; #TESTING if($test_count==0){ my %retval = ("error"=>"no gf data"); return \%retval; } -- ================================================================== Michiel Van Bel PhD student Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM mibel(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Binari] Traveling through hyperspace ain't like dusting crops, boy!
by Thomas Van Parys 14 Oct '08

14 Oct '08

I have the sad duty to inform you all of the fact that the Millennium Falcon has been taken down by the TIE fighters. Seems like he didn't succeed in making the jump into hyperspace. The Jedi must have felt that one. T. PS. First Post! -- ================================================================== Thomas Van Parys Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM thomas.vanparys(a)psb.ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] LotR: mapped onto Europe
by Kenny Billiau 14 Oct '08

14 Oct '08

http://strangemaps.wordpress.com/2007/06/03/121-where-on-earth-was-middle-e… Isengard was Hamburg. Mordor was, unsurprisingly, the most evil part of Europe: Transylvania. -- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau(a)psb.ugent.be http://bioinformatics.psb.ugent.be ==================================================================

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[Binari] are there still PERL developers left???
by lieven sterck 13 Oct '08

13 Oct '08

and are they also unable to run the perl debugger? L. -- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true!" H. Simpson

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[Binari] ideas to model my house for my cat :)
by Kenny Billiau 13 Oct '08

13 Oct '08

http://jimiyo.blogspot.com/2008/09/awesome.html

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[Binari] A lot of video's, cd's, dvd's and books for sale
by Kenny Billiau 13 Oct '08

13 Oct '08

Hi, I've got two big boxes of unused, unseen or unread material that I don't want to move along to the new house. If you want something of the list, let me know. If you don't like the price of the thing you like, we can sort things out. Trading is ok too ;) I'm gonna send this mail to beg by the end of the week. Happy Hunting, Kenny ----------------------------------------------------------------------- VISUAL ----------------------------------------------------------------------- 17 buyvideo's - 1 euro 't each or all 17 voor 15 euro! - spiderman - what women want - mission impossible II - hannibal - oceans 11 - vanilla sky - the gladiator - xxx - the net - bounce - tomb raider - american beauty - swordfish - memento - traffic - (documentaire) dinosaurus de mythe, de waarheid - minority report 3 euro each - 10 euro for all - crash (cronenberg) - needful things (stephen king) - gattaca - sleepers - saw I 2 tatort dvd's : 1 euro for both - tatort - schimanski - die schadron - tatort - schimanski - blutsbruder 1 poirot dvd: 1 euro - poirot - the adventures of the clapham cook & murder in the Mews 2 inspector morse dvd's : 1 euro for both - inspector morse - the dead of jericho - inspector morse - the settling of the sun 2 dvd's outer limits : 5 euro for both - outer limits - sex and science fiction - collection - outer limits - aliens among us - collection humo dvd's : 2 euro for both - de tweede humo-dvd : alle 33 fantastisch - humo's beeld van een zomer ----------------------------------------------------------------------- BOOKS ----------------------------------------------------------------------- 1 euro each: - Verhalen uit de Encyclopedia Patagonica - dree peremans - isbn:90-5466-126-7 - Wachten op niets - H.A. Gromperts - toneelkritieken uit de jaren 1952-1965 (modern repertoire ) G.A. Van Oorschot Amsterdam 3 euro each or all for 10: - jongens en wetenschap - sven speybrouck & koen fillet- isbn:90-5466-771-0 - +/- 360 pagina's - Wandelgids Noorwegen - het land van de zon in de nacht - gerard dielessen - isbn : 90-389-1707-4 - Over moraal, media en cultuur. De triomf van de misleiding - frans aerts - uitgeverij van halewijk - isbn : 90 5617 139 9 -110 pagina's - De digitale toekomst - guido swillen - lannoo - isbn : 90-209-2839-2 7 euro each: - Uit de schaduw - Een beknopte geschiedenis van de West-Vlaamse en Westfaalse jeugd- en kinderliteratuur - harde kaft - in perfecte staat - depotnummer: D/1996/0248/13 SCIENCE EN 15 euro: - Human Physiology - from cells to systems - 3rd edition - lauralee sherwood - wadsworth publisching company - isbn 0-314-09245-5 - engelstalig - hard cover 10 euro: - Antropology - seventh edition - the exploration of human diversity - international edition - conrad phillip kottak - isbn : 0-07-114429-3 - modern control systems - ninth edition - richard c. dorf & robert h. bishop - isbn: 0-13-030660-6 - 2001- +/- 800pagina's GRAPHICAL PROGRAMS 3 euro each or all for 10: - easy computing - flash MX - grand cru (isbn 90-5167-481-3) 767pagina's - inside - photoshop cs - gary david bouton (isbn 0-672-32644-2) +/- 1000 pagina's - taal: engels (no cdrom) - photoshop, illustrator, xpress en indesign gecombineerd - johan kerver - 2002- addison wesley - (isbn: 90-430-0631-9) - leer jezelf makkelijk : praktisch javascript - van duuren media - jan croonen - 2004- 196 pagina's (isbn : 90-5940-063-1) original price: 18,95euro O'Reilly 10 euro: - JAVA Swing Hacks - tips & tools for building killer GUIs - joshua Marinacci & Chris Adamson -2005- isbn : 0-596-00907-0 - original price 27,43 euro -520 pagina's 5 euro each: - PGPn - pretty good privacy - simson garfinkel - isbn :1-56592-098-8 - 390 pagina's - includes a comprehensive quick reference card - JAVA AspectJ Cookbook - russ miles - isbn : 0-596-00654-3 - original price : 37,80 euro COMPUTER SCIENCE 5 euro each: - JAVA server faces in action - kito mann - manning - isbn: 1-932394-12-5 - +/- 700 pagina's - the data compression - second edition- mark nelson , jean-loup gailly - isbn : 1-55851-434-1 - Red Hat Fedora Linux 3 Bible - christopher Negus - isbn :0-7645-7872-3 - original price 42,90 euro ROLEPAYING 3 euro each, 5 euro for both: - the 1000 hells - vampire the masquerade isbn : 1-56504-226-3 - 117 pagina's - half-damned: Dhampyr - isbn : 1-56504-247-6 - 80 pagina's ROMANS NL 4 euro each, both for 7euro: - Kristien hemmerechts - zonder grenzen - isbn 90 309 3109 4 - pocket - Arnon Grunberg - figuranten - isbn: 90-413-5053-7 ROMANS EN 3 euro each, all for 7 euro - Howard Blum - The brigade - pocket isbn 0-671-03779-x - Anne Rice - interview with the vampire - pocket - isbn 0-7088-6073-7 - Clive Cussler - Polar Shift - hard cover - isbn 0-718-14788-x ROMANS FR 2 euro - Dreamcatcher - stephen king - pocket - isbn 2-253-15144-0 KIDS 3 euro - isbn: 90-5096-038-3 - Kameleon - Danny Verbiest - (60 uitgewerkte onderwerpen) ----------------------------------------------------------------------- CD's ----------------------------------------------------------------------- 2 euro each: - 4cd-box - Nazareth - asia yes thunder - alice cooper - robert palmer - anthrax elp - the stranglers - deep purple - and many others - ean code: 4 011222 217493 - 2 cd box - Iberia - Isaac Albeniz - 3 cd box - The Concertos - Brahms - (Piano concerto 1 Op. 15, 2 Op. 83, Waltzes 1-16, Klavierstuecke Op. 119, Violin Concerto Op. 77, Concerto for Violin, Cello and orchestra Op. 102 15 euro: - 40 cd box - the masterworks - wolfgang amadeus mozart

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