The guy sitting next to Jens I guess?
It's weird how Jens has his own world .. euhm .. group somehow. He
totally skips lunchmeeting presentations and indeed .. fails to
introduce new people. ;)
Kenny
On Fri, 7 Aug 2009, Sofie Van Landeghem wrote:
Who the fuck?
Joris Meys wrote:
Dear all,
I'm currently writing my master
dissertation under the supervision of
Jens. I read the announcement of
FastTree 2 in the mail this week, and it
would greatly help me, as I have to
build a few thousand trees in a rather
short time frame. I'm not afraid of
figuring out how it works myself, but
if anybody has some tips, they are
greatly appreciated.
Thank you in advance
Joris
------------------------------------------------------------------------
Subject:
[Fwd: Other: Software.FastTree 2.0.0 for
inferring large]
From:
Yves Van de Peer <yves.vandepeer@psb.vib-ugent.be>
Date:
Sat, 01 Aug 2009 08:52:31 +0200
To:
Bioinformatics & Evolutionary
Genomics <beg@psb.ugent.be>
To:
Bioinformatics & Evolutionary
Genomics <beg@psb.ugent.be>
-------- Original Message --------
Subject: Other: Software.FastTree
2.0.0 for inferring large
Date: Sat, 1 Aug 2009 02:40:28 -0400
(EDT)
From: evoldir@evol.biology.mcmaster.ca
Reply-To: brian@helix.biology.mcmaster.ca
To: yves.vandepeer@psb.ugent.be
We announce FastTree 2, a tool for
inferring approximately
maximum-likelihood trees for large
alignments. FastTree is more accurate
than PhyML 3's default settings and
100-1,000 times faster than PhyML or
RAxML. FastTree analyzed an alignment of
>200,000 16S ribosomal RNAs in a
day on a desktop computer.
Models: Jukes-Cantor or GTR (nucleotide)
or JTT (amino acid)
Rate variation across sites: the CAT
approximation (1 rate per site)
Support values: local SH-like supports
(or global bootstrap)
FastTree 2 is available at
http://www.microbesonline.org/fasttree/
Morgan N. Price & Paramvir S. Dehal
Physical Biosciences Division
Lawrence Berkeley National Lab
fasttree@microbesonline.org
morgannprice@yahoo.com
--
==================================================================
Kenny Billiau
Web Developer
Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
kenny.billiau@ugent.be http://bioinformatics.psb.ugent.be
==================================================================
"What we feel isn't important. The only question is what we do."
-- Rohl
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