............................................________........................ ....................................,.-‘”...................``~.,.................. .............................,.-”...................................“-.,............ .........................,/...............................................”:,........ .....................,?......................................................\,..... .................../...........................................................,}.... ................./......................................................,:`^`..}.... .............../...................................................,:”........./..... ..............?.....__.........................................:`.........../..... ............./__.(.....“~-,_..............................,:`........../........ .........../(_....”~,_........“~,_....................,:`........_/........... ..........{.._$;_......”=,_.......“-,_.......,.-~-,},.~”;/....}........... ...........((.....*~_.......”=-._......“;,,./`..../”............../............ ...,,,___.\`~,......“~.,....................`.....}............../............. ............(....`=-,,.......`........................(......;_,,-”............... ............/.`~,......`-...............................\....../\................... .............\`~.*-,.....................................|,./.....\,__........... ,,_..........}.>-._\...................................|..............`=~-,.... .....`=~-,_\_......`\,.................................\........................ ...................`=~-,,.\,...............................\....................... ................................`:,,...........................`\..............__.. .....................................`=-,...................,%`>--==``....... ........................................_\..........._,-%.......`\............... ...................................,<`.._|_,-&``................`\.............. lieven sterck wrote:
if there wasn't an ocean separating us, I would smack you!!! O:-) L.
Thomas Abeel wrote:
I would paste it in Word, replace the spaces with a tabs, select the whole thing, copy it and paste it in Excel. Then select the column you need.
That's what I call KIS. No need to mess around with Perl
lieven sterck wrote:
aaahh, 8-) , the many ways of PERL !!!
Sebastian Proost wrote:
Esther-Kristin Lather schreef:
Hi!
How can I make this Regex greedy?
my ($seq) = ($var =~m/^(.*_{0,1}\d+)\s.*/);
if $var is "ara_prot.tfa_3154 | AT1G26170.1 | no family", I want to cut after the first whitespace so that $seq becomes be "ara_prot.tfa_3154" and not "ara_prot.tfa_3154 | AT1G26170.1".
I don't know where/ how to include the ? for non-greedy search. I would want to do it with round brackets, but that violates the round brackets I already use for getting a part of the string, no?
Thanks for any suggestions! Esther. _______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
use split ;)
-- ============================================================== Lieven Sterck, PhD
Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck@psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be
============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true!" H. Simpson
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_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ============================================================== Lieven Sterck, PhD
Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck@psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be
============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true!" H. Simpson
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_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Jonathan Gordon, Ph.D Tel:+32 (0)9 331 37 58 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM jogor@psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================