I mailed you a map of a hidden treasure marijn wrote:
presents, you say?
On 06/28/2010 12:58 PM, Kenny Billiau wrote:
I bet he gets loads of presents this way ..
On Mon, 28 Jun 2010, Frederik Delaere wrote:
born the 24th of july 1984 ?
Kenny Billiau wrote:
and don't you just love their very descriptive email address .. ;)
On Mon, 28 Jun 2010, Frederik Delaere wrote:
looks like the average help request mail overhere :)
Michiel Van Bel wrote:
*sigh* sometimes I really want to tell those guys to a) follow a decent english course b) read the fucking manual
I mean, it's not that difficult to read your email again before you send it, and make sure it makes sense :-(
---------------------------- Original Message ---------------------------- Subject: Re:Re: Fw: A PHD student using splice machine From: ¿µÑ©æ¯ <kxj19840724@126.com> Date: Sun, June 27, 2010 4:14 am To: "Michiel Van Bel" <michiel.vanbel@psb.vib-ugent.be> --------------------------------------------------------------------------
Dear Michiel Thanks for your help! I have tried to predict my test file using the software but the annotation file can be downloaded,why?
Best regards!
Xuejiao
> ok, > the software available on the website is only trained for > Arabidopsis > and Human. > So you can only use a test-file (in fasta format). The > output-format is > described here: > http://bioinformatics.psb.ugent.be/webtools/splicemachine/help/ > > In order to train splicemachine yourself, you'll have to use the > offline > installation (see attachment). > However, as I didn't write the software, I do not think I can > really > help you any further with any questions considering training > splicemachine yourself. Please have a look at the pdf-files > included in > the attachment, for any further instructions. > > Michiel > > > > > ¿µÑ©æ¯ wrote: > >> Hi Michieal >> Thanks for your reply! >> Here I want to know how to run the software.To the inputing >> file, how >> to distinguish the training file and the testing file?or the >> all the >> data should be in one file?Then how to distinguish the true or >> false >> sites? >> Thanks a lot! >> Regards! >> Xuejiao >> >> >> >>> Hi Kang, >>> you can run the splicemachine software at this location: >>> http://bioinformatics.psb.ugent.be/webtools/splicemachine/ >>> >>> Just copy-paste the sequences in fasta format into the >>> text-field, and >>> press the "run splicemachine" button. >>> >>> kind regards, >>> Michiel >>> >>> >>> >>> Yves Van De Peer wrote: >>> >>>> ------------------------------------------------------------------------ >>>> >>>> >>>> *From*: ¿µÑ©æ¯ <kxj19840724@126.com> >>>> *To*: yves.vandepeer@psb.vib-ugent.be >>>> <yves.vandepeer@psb.vib-ugent.be> >>>> *Sent*: Fri Jun 25 08:31:52 2010 >>>> *Subject*: A PHD student using splice machine >>>> >>>> Dear Professor >>>> I'm a PHD student doing research in splice sites >>>> prediction >>>> and I have read your article"Splice Machine: predicting splice >>>> sites >>>> from high-dimensional local context representations". Now I want >>>> to do >>>> some comparisons on NN269 acceptor datasets, but I don't know >>>> how to >>>> use the software(how to do prediction). Would you like to tell >>>> me the >>>> details? >>>> Best wishes to you and your family! >>>> Thanks a lot! >>>> >>>> >>>> Yours sincerely >>>> Kang xuejiao >>>> >>>> >>>> >>> -- >>> ================================================================== >>> >>> Michiel Van Bel >>> PhD student >>> Tel:+32 (0)9 331 36 95 fax:+32 (0)9 >>> 3313809 >>> VIB Department of Plant Systems Biology, Ghent University >>> Technologiepark 927, 9052 Gent, BELGIUM >>> mibel@psb.vib-ugent.be >>> http://www.psb.vib-ugent.be
>>> http://bioinformatics.psb.ugent.be >>> ================================================================== >>> >>> >>> >>> >> >> > -- > ================================================================== > Michiel Van Bel > PhD student > Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 > VIB Department of Plant Systems Biology, Ghent University > Technologiepark 927, 9052 Gent, BELGIUM > mibel@psb.vib-ugent.be > http://www.psb.vib-ugent.be > http://bioinformatics.psb.ugent.be > ================================================================== > > >
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Dear Michiel Thanks for your help! I have tried to predict my test file using the software but the annotation file can be downloaded,why?
Best regards!
Xuejiao
> ok, > the software available on the website is only trained for > Arabidopsis > and Human. > So you can only use a test-file (in fasta format). The > output-format is > described here: > http://bioinformatics.psb.ugent.be/webtools/splicemachine/help/ > > In order to train splicemachine yourself, you'll have to use the > offline > installation (see attachment). > However, as I didn't write the software, I do not think I can > really > help you any further with any questions considering training > splicemachine yourself. Please have a look at the pdf-files > included in > the attachment, for any further instructions. > > Michiel > > > > > ¿µÑ©æ¯ wrote: >> Hi Michieal >> Thanks for your reply! >> Here I want to know how to run the software.To the inputing >> file, how >> to distinguish the training file and the testing file?or the >> all the >> data should be in one file?Then how to distinguish the true or >> false >> sites? >> Thanks a lot! >> Regards! >> Xuejiao >> >> >>> Hi Kang, >>> you can run the splicemachine software at this location: >>> http://bioinformatics.psb.ugent.be/webtools/splicemachine/ >>> >>> Just copy-paste the sequences in fasta format into the >>> text-field, and >>> press the "run splicemachine" button. >>> >>> kind regards, >>> Michiel >>> >>> >>> >>> Yves Van De Peer wrote: >>>> >>>> ------------------------------------------------------------------------ >>>> >>>> >>>> *From*: ¿µÑ©æ¯ <kxj19840724@126.com> >>>> *To*: yves.vandepeer@psb.vib-ugent.be >>>> <yves.vandepeer@psb.vib-ugent.be> >>>> *Sent*: Fri Jun 25 08:31:52 2010 >>>> *Subject*: A PHD student using splice machine >>>> >>>> Dear Professor >>>> I'm a PHD student doing research in splice sites >>>> prediction >>>> and I have read your article"Splice Machine: predicting splice >>>> sites >>>> from high-dimensional local context representations". Now I want >>>> to do >>>> some comparisons on NN269 acceptor datasets, but I don't know >>>> how to >>>> use the software(how to do prediction). Would you like to tell >>>> me the >>>> details? >>>> Best wishes to you and your family! >>>> Thanks a lot! >>>> >>>> >>>> Yours sincerely >>>> Kang xuejiao >>>> >>>> >>> >>> >>> -- >>> ================================================================== >>> >>> Michiel Van Bel >>> PhD student >>> Tel:+32 (0)9 331 36 95 fax:+32 (0)9 >>> 3313809 >>> VIB Department of Plant Systems Biology, Ghent University >>> Technologiepark 927, 9052 Gent, BELGIUM >>> mibel@psb.vib-ugent.be >>> http://www.psb.vib-ugent.be >>> http://bioinformatics.psb.ugent.be >>> ================================================================== >>> >>> >>> >> >> >> > > > -- > ================================================================== > Michiel Van Bel > PhD student > Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 > VIB Department of Plant Systems Biology, Ghent University > Technologiepark 927, 9052 Gent, BELGIUM > mibel@psb.vib-ugent.be > http://www.psb.vib-ugent.be > http://bioinformatics.psb.ugent.be > ================================================================== > >
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_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ====================================================================== Kenny Billiau Bioinformatics Group / GoFORSYS Scientific Programmer +49 331 567 8626 billiau@mpimp-golm.mpg.de Max Planck Institute for Molecular Plant Physiology Am Mühlenberg 1, 14476 Potsdam-Golm, Germany http://bioinformatics.mpimp-golm.mpg.de http://www.goforsys.de ====================================================================== ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Frederik Delaere
Tel:+32 (0)9 331 38 14 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM frlae@psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ====================================================================== Kenny Billiau Bioinformatics Group / GoFORSYS Scientific Programmer +49 331 567 8626 billiau@mpimp-golm.mpg.de Max Planck Institute for Molecular Plant Physiology Am Mühlenberg 1, 14476 Potsdam-Golm, Germany http://bioinformatics.mpimp-golm.mpg.de http://www.goforsys.de ======================================================================
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
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_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Frederik Delaere Tel:+32 (0)9 331 38 14 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM frlae@psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================