CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday) Greetz, Seb -------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be> Tom, You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ================================================================== -- ================================================================== Sebastian Proost PhD Student Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein
yes he did!!!! Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck@psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true!" H. Simpson
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;) Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Michiel Van Bel PhD student Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM mibel@psb.vib-ugent.be http://www.psb.vib-ugent.be ==================================================================
Actually I am to blame, too. As Tom is probably runing my scripts (well I never used them to that extent...). Eherm, eherm. Esther. Michiel Van Bel wrote:
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;)
Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
I emailed IT about this issue (multiple times), that maybe they should prevent users from overfloading the system, instead of waiting for it to happen and then clean up the mess (and leave me out of a job for 6 hours). However, they feel we should explain the usage of the cluster properly to new users, so that it wouldn't happen anyway. So maybe some words of advice are necessary ;-) Sofie Esther-Kristin Lather wrote:
Actually I am to blame, too. As Tom is probably runing my scripts (well I never used them to that extent...). Eherm, eherm.
Esther.
Michiel Van Bel wrote:
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;)
Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- Sofie Van Landeghem PhD Student VIB Department of Plant Systems Biology, Ghent University Bioinformatics and Evolutionary Genomics Technologiepark 927, 9052 Gent, BELGIUM Tel: +32 (0)9 331 36 95 fax:+32 (0)9 3313809 Website: http://bioinformatics.psb.ugent.be
If you want too you can crash/slow down the system with just about any script or program if you run enough copies at once or use it on big datasets. Just look at the list, it's nearly always something that works and then is scaled up to much. So you're equally guilty as the people that wrote the operating system imho. Seb Esther-Kristin Lather schreef:
Actually I am to blame, too. As Tom is probably runing my scripts (well I never used them to that extent...). Eherm, eherm.
Esther.
Michiel Van Bel wrote:
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;)
Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Sebastian Proost PhD Student Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein
Any *nix based operating system has options available to limit what a user can do. So preventing this type of mess-ups is the server admins responsibility. However, you may want to think about what you're about to unleash to the cluster/midas and take into account some courtesy for your colleagues. Limiting the number of jobs in a queue, an issue that we have seen around several times since I discovered it a few months ago, is a simple setting. You can actually set the maximum number of jobs that can be queued, any jobs after that will simply be discarded. Or you can limit the number of jobs any user can queue. BTW, I fully agree with solan. It is a very good idea to give new cluster users a proper introduction on what you can and cannot do with the cluster. I was playing with the idea of writing a wiki entry on cluster-etiquette, but didn't do it because I left for Boston. If somebody start this, I would like to contribute. cheers, Thomas Sebastian Proost wrote:
If you want too you can crash/slow down the system with just about any script or program if you run enough copies at once or use it on big datasets. Just look at the list, it's nearly always something that works and then is scaled up to much.
So you're equally guilty as the people that wrote the operating system imho.
Seb
Esther-Kristin Lather schreef:
Actually I am to blame, too. As Tom is probably runing my scripts (well I never used them to that extent...). Eherm, eherm.
Esther.
Michiel Van Bel wrote:
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;)
Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein
------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
I think it would be a good idea to start working on this. After my deadline on Monday, I might have a look into it :-) Sofie Thomas Abeel wrote:
Any *nix based operating system has options available to limit what a user can do. So preventing this type of mess-ups is the server admins responsibility. However, you may want to think about what you're about to unleash to the cluster/midas and take into account some courtesy for your colleagues.
Limiting the number of jobs in a queue, an issue that we have seen around several times since I discovered it a few months ago, is a simple setting. You can actually set the maximum number of jobs that can be queued, any jobs after that will simply be discarded. Or you can limit the number of jobs any user can queue.
BTW, I fully agree with solan. It is a very good idea to give new cluster users a proper introduction on what you can and cannot do with the cluster. I was playing with the idea of writing a wiki entry on cluster-etiquette, but didn't do it because I left for Boston. If somebody start this, I would like to contribute.
cheers, Thomas
or we can have a training session for the supervisors ;-) Sofie Van Landeghem wrote:
I think it would be a good idea to start working on this. After my deadline on Monday, I might have a look into it :-)
Sofie
Thomas Abeel wrote:
Any *nix based operating system has options available to limit what a user can do. So preventing this type of mess-ups is the server admins responsibility. However, you may want to think about what you're about to unleash to the cluster/midas and take into account some courtesy for your colleagues.
Limiting the number of jobs in a queue, an issue that we have seen around several times since I discovered it a few months ago, is a simple setting. You can actually set the maximum number of jobs that can be queued, any jobs after that will simply be discarded. Or you can limit the number of jobs any user can queue.
BTW, I fully agree with solan. It is a very good idea to give new cluster users a proper introduction on what you can and cannot do with the cluster. I was playing with the idea of writing a wiki entry on cluster-etiquette, but didn't do it because I left for Boston. If somebody start this, I would like to contribute.
cheers, Thomas
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck@psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true!" H. Simpson
I teach .. "MySQL practical course: basic". If I would mention stuff like connectionlimitations I'd have no time for exercices ;) -Kenny On Mon, 2 Mar 2009, Michiel Van Bel wrote:
Well, Kenny give MySQL lessons to him ... He should have mentioned that a sql server can only handle so many connections at the same time :p So who is to blame... The teacher or the student ;)
Sebastian Proost wrote:
CC to beg :) Well I guess a little public humiliation never hurts.... Let's add this one to the list as well
https://bioinformatics.psb.ugent.be/knowledge/wiki-bioinformatics/Binari
Btw did each job also connect to psbsql02 bringing that server (and hosted websites eg. Bogas) down as well ? (Kenny was complaining about this yesterday)
Greetz, Seb
-------- Originele bericht -------- Onderwerp: Re: cluster down Datum: Mon, 02 Mar 2009 10:50:22 +0100 Van: HelpDesk <help@psb.ugent.be> Aan: tobus@psb.vib-ugent.be CC: Bioinformatics & Evolutionary Genomics <beg@psb.vib-ugent.be> Referenties: <49AB9D60.4080503@psb.ugent.be> <29261.157.193.202.129.1235985243.squirrel@webmail.psb.ugent.be>
Tom,
You submitted 82500 jobs, which is normally beyond the limit of 70.000. Can you empty your queue please? If not, we will delete them for you. thanks
tobus@psb.vib-ugent.be wrote:
Well, yesterday i did submit a lot of jobs, but i was unable to empty my queue ..
Did someone submit lot's of jobs to the cluster? Restarting the cluster master on chione results in a segmentation fault. If you did, please empty you queue so that we can restart the master. Please notify us.
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== IT HelpDesk help@psb.ugent.be
Tel:+32 (0)9 3313816 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM http://www.psb.ugent.be ==================================================================
-- ================================================================== Sebastian Proost PhD Student
Tel:+ 32 (0) 9 33 13 822 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM sebastian.proost@psb.vib-ugent.be http://www.psb.ugent.be ================================================================== "If I knew what I was doing, it wouldn't be called research." --Albert Einstein ------------------------------------------------------------------------
_______________________________________________ Binari Implicitly Neglects All Recursive Iterations https://maillist.psb.ugent.be/mailman/listinfo/binari
-- ================================================================== Kenny Billiau Web Developer Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM kenny.billiau@ugent.be http://bioinformatics.psb.ugent.be ================================================================== "Never get out of the boat" -- Chef, APN
participants (7)
-
Esther-Kristin Lather -
Kenny Billiau -
lieven sterck -
Michiel Van Bel -
Sebastian Proost -
Sofie Van Landeghem -
Thomas Abeel