May 2008 - ciscode@psb.ugent.be - maillist.psb.ugent.be

[Ciscode] CisCode Mailling list and Wiki
by Elisabeth Wischnitzki 13 Jan '11

13 Jan '11

Dear all, The CisCode Wiki will be ready soon. You will need a user name and a password to access it. I will create them for every person in this mailing list and send the information to each of you separately. So please reply to me (elisabeth.wischnitzki(a)psb.ugent.be) so I can be sure your email address is correct. If you know somebody who is not in the list but should be, please tell me. For this purpose I also included a list of all email addresses below. Thank you all in advance. regards Elisabeth Email addresses included in the CisCode mailing list: alice.bianchi(a)unimi.it b.h.davies(a)leeds.ac.uk baima(a)inran.it chiara.tonelli(a)unimi.it eleonora.cominelli(a)unimi.it elisabeth.wischnitzki(a)psb.ugent.be forte(a)inran.it gerco.angenent(a)wur.nl jan.lohmann(a)tuebingen.mpg.de katia.petroni(a)unimi.it klaas.vandepoele(a)psb.ugent.be lars.ostergaard(a)bbsrc.ac.uk lucia.colombo(a)unimi.it m.bemer(a)science.ru.nl monica.fornaro(a)unimi.it morelli(a)inran.it nicolas.arnaud(a)bbsrc.ac.uk penalosa(a)inran.it possenti(a)inran.it robert.sablowski(a)bbsrc.ac.uk stefano.bencivenga(a)unimi.it valentina.calvenzani(a)unimi.it wolfgang.busch(a)tuebingen.mpg.de yves.vandepeer(a)psb.ugent.be -- ================================================================== Elisabeth Wischnitzki Tel:+32 (0)9 331 38 22 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM elwis(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Ciscode] FW: [Arabuk] Brassica genome sequencing project
by robert sablowski (JIC) 29 May '08

29 May '08

Dear All, At the meeting in Rome we were asked about the availability of Brassica sequences. Please check the message from Ian Bancroft below (and the URL). best wishes Robert ------ Forwarded Message From: "ian bancroft (JIC)" <ian.bancroft(a)bbsrc.ac.uk> Date: Tue, 13 May 2008 12:13:33 +0100 To: "arabuk (Mailman List)" <arabuk(a)lists.bbsrc.ac.uk>, "uk-brc (Mailman List)" <uk-brc(a)lists.bbsrc.ac.uk> Conversation: Brassica genome sequencing project Subject: [Arabuk] Brassica genome sequencing project Dear colleagues, I am pleased to be able to inform the UK Brassica and Arabidopsis research communities that the UK-China B. rapa sequencing project has now sequenced and annotated 99 BAC clones, totalling 12.3 Mb. This brings the cumulative amount of complete B. rapa BAC sequence data in the public databases to 75.3 Mb, which represents ca. 20% of the gene space of the B. rapa genome. Automated annotations of the sequences from the UK-China project, along with all others from the multinational B. rapa Genome Sequencing Project that have been submitted to the public databases, are available via the Brassica Genome Gateway site (http://brassica.bbsrc.ac.uk/ <http://brassica.bbsrc.ac.uk/> ). The BAC sequences have been annotated for an expanding set of features including gene predictions, SSR and restriction site identification, and alignments with Arabidopsis gene models, BAC end sequences (to identify overlapping clones) and the EST assemblies used for development of the JIC-JCVI-Cogenics community Brassica microarray. Ian Bancroft, on behalf of the UK-China B. rapa genome sequencing project. _______________________________________________ Arabuk mailing list Arabuk(a)lists.bbsrc.ac.uk https://www.lists.bbsrc.ac.uk/mailman/listinfo/arabuk ------ End of Forwarded Message

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[Ciscode] CISCODE Meeting
by Giorgio Morelli 26 May '08

26 May '08

Dear All, please find attached the information to reach the Hotel Mediterraneo and the meeting place (Associazione Civita). I also enclosed the meeting programme and some hints about restaurants nearby the hotel. Please print the pdf file and bring it with you in Rome. I also would like to ask you to send me your FISCAL NUMBER, because I need it for the receipt of the meeting registration. Don't hesitate to contact me if you need further information. Just in case you need to reach me once you are in Rome, my cell phone number is +39 333 3016014 Looking forward to meet you in Rome, Giorgio Giorgio Morelli Istituto Nazionale di Ricerca per gli Alimenti e la Nutrizione Via Ardeatina 546 00178 Roma tel +39 06 51494415 fax +39 06 51494550 morelli(a)inran.it

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[Ciscode] just a mailing list test
by Elisabeth Wischnitzki 26 May '08

26 May '08

-- ================================================================== Elisabeth Wischnitzki Tel:+32 (0)9 331 38 22 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM elwis(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Ciscode] changes
by Elisabeth Wischnitzki 26 May '08

26 May '08

Dear all, This is a short update about the recent changes in the Wiki and the mailing list. Wiki: I added a page for our meeting presentations to the Wiki. You can find the link next to the nice group pictures (Thanks, Joachim!). Mailing list: The 'reply-to' option in the mailing list is changed now. Every time you press 'reply' just the person, who sent the original message will get the answer. If you still want to reply to everybody use 'reply-to-all'. best regards Elisabeth -- ================================================================== Elisabeth Wischnitzki Tel:+32 (0)9 331 38 22 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM elwis(a)psb.ugent.be http://www.psb.ugent.be ==================================================================

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[Ciscode] group pictures
by Joachim Forner 26 May '08

26 May '08

Hi everybody, hope you all had a good journey back. The group pictures can now be found on the Wiki (Main Page/ General information/ Meetings/Current events). Enjoy. Regards, Joachim ----------------------------------------------------------------- Dr. Joachim Forner Max-Planck-Institute for Developmental Biology Department VI - Molecular Biology AG Jan Lohmann Spemannstr. 35 D-72076 Tübingen GERMANY phone: +49-7071-601-1301 (lab) phone: +49-7071-601-1302 (office) fax: +49-7071-601-1412 email: joachim.forner(a)tuebingen.mpg.de

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[Ciscode] CISCODE
by Angenent, Gerco 07 May '08

07 May '08

Dear all, The 2nd CISCODE meeting is approaching soon at will be held on Friday May 23. I suppose that you all received the information about Hotel and meeting place from Giorgio Morelli. If not, please contact him. The schedule for the meeting will be very similar as the one via had in Venice. Each group is supposed to present their results and plans. I put the PI in the schedule, but that does not mean that the PI should present the progress, in contrary, it would be good when the post-doc present his/her own work. We have plenty of time for informal discussions and also the schedule for presentations is quit relaxed and should be flexible. I have scheduled a presentation from each group for 35 minutes (incl discussion) (see attached program). For the venice meeting we prepared a list with constructs, lines etc., which is also present on the wiki website ( https://bioinformatics.psb.ugent.be/knowledge/wiki-ciscode/index.php/Mai n_Page). Please update the availability of the constructs and lines on the WIKI site and also in the attached document (total-CISCODE). When everything is updated I will print these lists of (planned) constructs and lines and bring it to Rome. For questions regarding the WIKI site, please contact Elisabeth Wischnitzki. With kind regards and hope to see you soon, Gerco Angenent ........................................................................ ......... Note: Changed phone number Prof dr Gerco C. Angenent Clusterleader 'Plant Developmental Systems' Business Unit Bioscience Plant Research International Bornsesteeg 65 6708 PD Wageningen The Netherlands phone: +31-317-480953 fax: +31-317-423110 Email: Gerco.angenent(a)wur.nl http://www.pri.wur.nl/UK/research/research+themes/Regulation+of+growth+a nd+development+of+plants/ ........................................................................ ... <<total-CISCODE.doc>> <<CISCODE meeting RomeMay 23.doc>>

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