- Seminars - maillist.psb.ugent.be

PSB event reminder
by contact＠psb.vib-ugent.be 05 Dec '10

05 Dec '10

Calendar Name: seminars Scheduled for: Tuesday, December 7 2010, 10:00 - 11:00 Event text: Klaas Vandepoele VIB, Dept. of Plant Systems Biology Ghent University BELGIUM Details: "Transferring gene functions between different plant species using PLAZA 2.0" ABSTRACT PLAZA is an online comparative genomics platform where data generated by different plant sequencing initiatives is integrated and combined with advanced methods for data mining. This resource includes structural and functional annotation of published plant genomes together with a large set of interactive tools to study gene function and gene and genome evolution. Pre-computed data sets cover homologous gene families, multiple sequence alignments, phylogenetic trees, intra-species whole-genome dot plots, and genomic colinearity between species. The Workbench provides an efficient environment to analyze user-defined gene sets using PLAZA's interface including GO enrichment analysis for all species. The second release of this resource integrates whole-genome information from 23 plants covering 11 dicots, 5 monocots, 2 (club-)mosses and 5 algae (>840,000 genes stored in >22,000 multi-species gene families). New features include functional gene clustering based on GO annotations, interactive Syntenty plots to study the gene organization of homologous genes and the reliable identification of orthologous genes (through the integration of a complementary set of data types). During this presentation I will elaborate on different methodologies to identify orthologous genes in different species, discuss pitfalls inherent to simple ad-hoc approaches to identify 'functional homologs' and demonstrate how PLAZA 2.0 can facilitate the transfer of functional information between plants. PLAZA 2.0 is available at http://bioinformatics.psb.ugent.be/plaza/.

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seminar Alexis Maizel 17/12
by Nathalie Vanden Hautte 02 Dec '10

02 Dec '10

You are receiving this e-mail because you subscribed to our seminars announcements and reminders service at https://maillist.psb.ugent.be/mailman/listinfo/seminars <https://maillist.psb.ugent.be/mailman/listinfo/seminars> . If you do not wish to receive this information anymore, please unsubscribe from future mailings at https://maillist.psb.ugent.be/mailman/options/seminars <https://maillist.psb.ugent.be/mailman/options/seminars> . VIB - Department of Plant Systems Biology Technologiepark 927 B - 9052 Gent/Zwijnaarde Phone: +32 9 33 13 800 Fax: +32 9 33 13 809 Http://www.psb.vib-ugent.be

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FW: upcoming seminars December
by Nathalie Vanden Hautte 02 Dec '10

02 Dec '10

Dear All Enclosed the updated list for December. Kind regards Nathalie From: Nathalie Vanden Hautte Sent: donderdag 25 november 2010 11:09 To: 'meetings(a)psb.vib-ugent.be' Subject: upcoming seminars December Dear All Enclosed you can find our upcoming seminars for December. Kind regards Nathalie ____________________________________________ Nathalie Vanden Hautte Administrative Assistant VIB, Department of Plant Systems Biology Ghent University Technologiepark 927 9052 Gent Belgium Phone: +32/9/33.13.800 Fax: +32/33.13.809 Http://www.psb.ugent.be nahau(a)psb.vib-ugent.be

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PSB event reminder
by contact＠psb.vib-ugent.be 02 Dec '10

02 Dec '10

Calendar Name: seminars Scheduled for: Thursday, December 2 2010, 11:00 - 12:30 Event text: Pascal Genschik Institut de Biologie Mol�culaire des Plantes du CNRS IBMP-CNRS - UPR2357 Strasbourg FRANCE Details: "CUL4-DDB1 is required to maintain epigenetic gene repression via its interaction with the Arabidopsis PRC2 complex" ABSTRACT Protein ubiquitylation regulates a broad variety of biological processes in all eukaryotes. Recent work identified a novel class of cullin-RING ligase (CRL) composed of CUL4, DDB1, and one substrate receptor also called DCAF (DDB1 and CUL4-associated factors). DCAFs are WD40 proteins containing WDxR motifs that are required for efficient binding to DDB1. In both human and Arabidopsis, about 90 different DCAFs have been predicted, but for most of them their function or substrates remain still unknown. Among putative Arabidopsis DCAFs we identified MSI1, which belongs to an evolutionary conserved protein family. MSI1-like proteins contribute to different protein complexes, including the epigenetic regulatory Polycomb Repressive Complex2 (PRC2). Here we will present evidence that Arabidopsis MSI1 physically interacts with DDB1 and is part of a multimeric CRL4-type E3 complex. Interestingly the CUL4-DDB1MSI1 complex is required to maintain parental imprinting of MEA, a target gene of the Arabidopsis PRC2 complex. Moreover, we extended these studies to another MSI1-like protein, called MSI4/FVE, which is involved in the regulation of flowering time. Overall, we will discuss the mechanism by which CRL4s are required to maintain Polycomb-mediated gene repression.

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PSB event reminder
by contact＠psb.vib-ugent.be 30 Nov '10

30 Nov '10

Calendar Name: seminars Scheduled for: Thursday, December 2 2010, 11:00 - 12:30 Event text: Pascal Genschik Institut de Biologie Mol�culaire des Plantes du CNRS IBMP-CNRS - UPR2357 Strasbourg FRANCE Details: "CUL4-DDB1 is required to maintain epigenetic gene repression via its interaction with the Arabidopsis PRC2 complex" ABSTRACT Protein ubiquitylation regulates a broad variety of biological processes in all eukaryotes. Recent work identified a novel class of cullin-RING ligase (CRL) composed of CUL4, DDB1, and one substrate receptor also called DCAF (DDB1 and CUL4-associated factors). DCAFs are WD40 proteins containing WDxR motifs that are required for efficient binding to DDB1. In both human and Arabidopsis, about 90 different DCAFs have been predicted, but for most of them their function or substrates remain still unknown. Among putative Arabidopsis DCAFs we identified MSI1, which belongs to an evolutionary conserved protein family. MSI1-like proteins contribute to different protein complexes, including the epigenetic regulatory Polycomb Repressive Complex2 (PRC2). Here we will present evidence that Arabidopsis MSI1 physically interacts with DDB1 and is part of a multimeric CRL4-type E3 complex. Interestingly the CUL4-DDB1MSI1 complex is required to maintain parental imprinting of MEA, a target gene of the Arabidopsis PRC2 complex. Moreover, we extended these studies to another MSI1-like protein, called MSI4/FVE, which is involved in the regulation of flowering time. Overall, we will discuss the mechanism by which CRL4s are required to maintain Polycomb-mediated gene repression.

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seminar Pascal Genschik 02/12
by Nathalie Vanden Hautte 25 Nov '10

25 Nov '10

You are receiving this e-mail because you subscribed to our seminars announcements and reminders service at https://maillist.psb.ugent.be/mailman/listinfo/seminars <https://maillist.psb.ugent.be/mailman/listinfo/seminars> . If you do not wish to receive this information anymore, please unsubscribe from future mailings at https://maillist.psb.ugent.be/mailman/options/seminars <https://maillist.psb.ugent.be/mailman/options/seminars> . VIB - Department of Plant Systems Biology Technologiepark 927 B - 9052 Gent/Zwijnaarde Phone: +32 9 33 13 800 Fax: +32 9 33 13 809 Http://www.psb.vib-ugent.be

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upcoming seminars December
by Nathalie Vanden Hautte 25 Nov '10

25 Nov '10

Dear All Enclosed you can find our upcoming seminars for December. Kind regards Nathalie ____________________________________________ Nathalie Vanden Hautte Administrative Assistant VIB, Department of Plant Systems Biology Ghent University Technologiepark 927 9052 Gent Belgium Phone: +32/9/33.13.800 Fax: +32/33.13.809 Http://www.psb.ugent.be nahau(a)psb.vib-ugent.be

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FW: seminar Raf Roelands & Philippe Gabant 24/11
by Nathalie Vanden Hautte 24 Nov '10

24 Nov '10

REMINDER From: Nathalie Vanden Hautte [mailto:nahau@psb.vib-ugent.be] Sent: donderdag 4 november 2010 16:12 To: _users(a)dmbr.ugent.be; meetings(a)psb.vib-ugent.be Subject: seminar Raf Roelands & Philippe Gabant 24/11 You are receiving this e-mail because you subscribed to our seminars announcements and reminders service at https://maillist.psb.ugent.be/mailman/listinfo/seminars <https://maillist.psb.ugent.be/mailman/listinfo/seminars> . If you do not wish to receive this information anymore, please unsubscribe from future mailings at https://maillist.psb.ugent.be/mailman/options/seminars <https://maillist.psb.ugent.be/mailman/options/seminars> . VIB - Department of Plant Systems Biology Technologiepark 927 B - 9052 Gent/Zwijnaarde Phone: +32 9 33 13 800 Fax: +32 9 33 13 809 Http://www.psb.vib-ugent.be

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PSB event reminder
by contact＠psb.vib-ugent.be 24 Nov '10

24 Nov '10

Calendar Name: seminars Scheduled for: Wednesday, November 24 2010, 14:00 - 15:30 Event text: Raf Roelands & Philippe Gabant EUROGENTEC S.A. Seraing BELGIUM Details: "Use of bacterial poison antidote genes as tools: from DNA engineering to synthetic biology" ABSTRACT Since the �90s, bacterial poison/antidote genes have been used as tools in molecular biology. Today, the ccdA, ccdB gene loci of the F plasmid are present in vectors for protein expression and DNA cloning. These genes are either used for selection of recombinant molecules (Gateway vectors, TOPO vectors, Zero Background vectors) and for the maintenance of expression vectors in E.coli. Nowadays most of the scientists use those genes as tools for their daily research works. Most of the time scientists use those genes ignoring their origin and properties. This lack of information could limit the efficiency of their DNA cloning and protein expression experiments. The aim of this scientific meeting is to present the natural origins antidote poison genes, their properties and open a discussion on their current and future applications.

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PSB event reminder
by contact＠psb.vib-ugent.be 22 Nov '10

22 Nov '10

Calendar Name: seminars Scheduled for: Wednesday, November 24 2010, 14:00 - 15:30 Event text: Raf Roelands & Philippe Gabant EUROGENTEC S.A. Seraing BELGIUM Details: "Use of bacterial poison antidote genes as tools: from DNA engineering to synthetic biology" ABSTRACT Since the �90s, bacterial poison/antidote genes have been used as tools in molecular biology. Today, the ccdA, ccdB gene loci of the F plasmid are present in vectors for protein expression and DNA cloning. These genes are either used for selection of recombinant molecules (Gateway vectors, TOPO vectors, Zero Background vectors) and for the maintenance of expression vectors in E.coli. Nowadays most of the scientists use those genes as tools for their daily research works. Most of the time scientists use those genes ignoring their origin and properties. This lack of information could limit the efficiency of their DNA cloning and protein expression experiments. The aim of this scientific meeting is to present the natural origins antidote poison genes, their properties and open a discussion on their current and future applications.

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