[BBC] 4th Integrative Bioinformatics Workshop - Call for Participation.
Bert Coessens
bert.coessens at esat.kuleuven.be
Thu Jul 26 17:07:02 CEST 2007
*** CALL FOR PARTICIPATION ***
4th Integrative Bioinformatics Workshop
September 10-12, 2007
University of Gent, Belgium
*** REGISTER ONLINE ***
workshop web: http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib07/
IMPORTANT DATES
August 13: Registration for participation deadline
August 27: Poster submission deadline
KEYNOTE TALKS
Prof Carole Goble, School of Computer Science, University of Manchester, UK
"myExperiment: A MySpace for the Self-serving Bioinformatician"
Prof Søren Brunak, BioCentrum-DTU, Technical University of Denmark
"Integrating data for interactome analysis across organisms"
Dr David Searls, Senior Vice President, Informatics, GlaxoSmithKline
Pharmaceuticals, USA
"Integrative Drug Discovery"
Dr Luis Serrano, EMBL, Heidelberg, Germany
"Structure-based prediction of protein-protein and protein-DNA
interactions"
Sponsored by the European Science Foundation
PROGRAMME
Monday 10th September 2007
11:30 Registration desk opens
12:30 Lunch (buffet style)
13:10 Welcome followed by some administrivia
Jacob Koehler and Martin Kuiper
13:20
keynote Understanding interactomes by data integration
Søren Brunak (Technical University of Denmark)
Session 1
Database Integration and Integrative Databases
14:00 A Methodology for Comparative Functional Genomics
Alam, I; Cornell, M; Soanes, D M; Hedeler, C; Wong, H M; Rattray, M;
Hubbard, S J;
Talbot, N J; Oliver, S J; Paton, N W
14:25 Community-based Linking of Biological Network Resources: Databases,
Formats and Tools
Telgkamp, M.; Koschützki, D.; Schwöbbermeyer, H.; Schreiber, F.
14:50 Defining Mapping Mashups with BioXMash
Hunt, E; Boesinger, C; Jakubowska, J; Norrie, M
15:15 Data Linkage Graph: computation, querying and knowledge discovery
of life science database networks
Lange, M.; Himmelbach, A.; Schweizer, P.; Scholz, U.
15:40 Coffee break
16:00 Exploring PSI-MI XML Collections Using DescribeX
Samavi, R.; Consens, M.P.; Khatchadourian, C.; Topaloglou, T.
16:25 VINEdb: a data warehouse for integration and interactive exploration
of life science data
Hariharaputran, S; Töpel, T; Brockschmidt, B; Hofestädt, R
16:50 Integration of Heterogeneous Cis-Antisense Gene Pair Data Sets Mapping
onto the Human Genome
Orlov, YL; Zhou, J; Kuznetzov, VA
17:15 Exchange of integrated datasets - the OXL format
Taubert, J; Sieren, KP; Hindle, M; Hoekman, B; Winnenburg, R; Philippi, S;
Rawlings, C; Köhler, J.
17:40 Poster Session
19:30 BeerFest
Tuesday 11th September 2007
10:00
keynote myExperiment: A MySpace for the Self-serving Bioinformatician?
Carole Goble (University of manchester, UK)
Session 2
Integrative Systems Biology I
10:40 Integration of constraints documented in SBML, SBO, and the SBML Manual
facilitates validation of biological models
Lister, AL; Pocock, M; Wipat, A
11:05 Coffee break
11:20 Stochastic effects in a compartmental model for mitotic
checkpoint regulation
Ibrahim, B; Dittrich, P; Diekmann, S; Schmitt, E
11:45 Reactome: An integrated expert model of human molecular processes and
access toolkit
de Bono, B
12:10 A High-Level Petri Net Framework for Genetic Regulatory Networks
Banks, R; Steggles, LJ
12:35 Lunch (buffet style)
13:30 keynote Structures in systems biology
Pedro Beltrao1, Christina Kiel and Luis Serrano (CRG-EMBL Systems
Biology Unit, Spain)
Session 3
Integrative Systems Biology II
14:10 From MIN meta-model to ordinary differential equations
Yartseva, A; Devillers, R; Klaudel, H; Kepes, F
14:35 GeneBrowser: a novel approach for integration and functional
classification
of microarray data
Arrais, J.P.; Santos, B.; Fernandes, J.; Carreto, L.; Santos, M.A.S.;
Oliveira, J.L.
14:50 Functional and Transcriptional Coherency of Modules in the Human Protein
Interaction Network
Futschik, ME; Chaurasia, G; Russ, J; Herzel, H
15:15 Coffee break
Session 4
Data Analysis and Interpretation
15:45 Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags
Souche, E.L.; Hellemans, B.; Van Houdt, J.K.J.; Canario, A.; Klages,
S.; Reinhardt, R.;
Volckaert, F.A.M.
16:10 Mapping protein information to disease terminologies
Mottaz, A.; Yip, Y.L.; Ruch, P.; Veuthey, A.-L.
16:35 Developmental Anatomy Ontology of Zebrafish -an Integrative
semantic framework
Belmamoune, M.; Verbeek, F.J.
17:00 CIDA: An integrated software for the design, characterisation and global
comparison of microarrays
Khalid, S; Khan, M; Symonds, A; Wang, P; Liu, X; Li, S
17:25 IMS2 -- An integrated medical software system for early lung
cancer detection
using ion mobility spectrometry data of human breath
Baumbach, J; Bunkowski, A; Lange, S; Oberwahrenbrock, T;
Kleinboelting, N; Rahmann, S;
Baumbach, JI
17:50 Poster session
19:30 Conference dinner
Wednesday 12th September 2007
10:00 keynote Integrative Drug Discovery
David Searls (GlaxoSmithKline Pharmaceuticals, USA)
Session 5
Data Classification
10:40 Supervised classification of combined copy number and gene
expression data
Riccadonna, S; Jurman, G; Merler, S; Paoli, S; Quattrone, A; Furlanello, C
11:05 Prediction of protein-protein interactions using one-class
classification
methods and integrating diverse biological data
Reyes, J. A.; Gilbert, D. R.
11:30 Coffee break
11:50 Monophyletic clustering and characterization of protein families
Zhang, J.; Zhao, Z.; Evershed, J.; Li, G.
12:15 A Tool for Evaluating Strategies for Grouping of Biological Data
Jakoniene, V; Lambrix, P
12:40 Closing remarks
12:50 Lunch (buffet style)
and Depart
ORGANISING COMMITTEE
Ralf Hofestädt, Bielefeld University, Germany
Jacob Koehler, Rothamsted Research, UK
Martin Kuiper, VIB, University of Gent, Belgium
Paul Verrier, Rothamsted Research, UK
CONTACT
Karen Morris, BAB Division, Rothamsted Research, West Common,
Harpenden, Herts. AL5 2JQ, UK
email: karen.morris(at)bbsrc.ac.uk
tel: +44 (0)1582 763133 extension 2813
fax: +44 (0)1582 467907
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