[BBC] BioSB Course Matlab (2nd edition), 28 October 2016, Wageningen

[Celia.vanGelder at radboudumc.nl]

BioSB Course Matlab, 28 October 2016, Wageningen
Website: http://biosb.nl/education/course-portfolio-2/course-matlab/ .
Coordinators: Hans Stigter (WUR),  Celia van Gelder (BioSB, celia.van.gelder at biosb.nl<mailto:celia.van.gelder at biosb.nl>)
Registration:  http://biosb.nl/education/course-portfolio-2/course-matlab/enrollment-course-matlab/
Please note that if you are (or become) a member of BioSB  this course is free of charge for PhD students and with reduced fee for other researchers!

Goal
The main goal of this course is to get acquainted with Matlab software for use within Systems Biology. After this introductory course you will have gained the basic knowledge to pursue further use via self-study of Matlab in order to apply more advanced programming techniques within Matlab in your own research. In summary, the sub-goals are:

1.       To learn the philosophy behind Matlab and its syntax

2.       To program simple Systems Biology models in Matlab (in ordinary differential equation format) and to solve these differential equations with Matlab

Target audience
Primarily targeting researchers from academia, but participants from the private sector are also welcome. The course focusses on the use of Matlab for building dynamic Systems Biology Models in terms of ordinary differential equations.

Course Description
This is a one-day introduction to the possibilities of Matlab as a programming environment for simulation and analysis of biological models. We will start with a simple introduction of the basics of Matlab (matrices, vectors, manipulation of matrices and presentation of data). Having obtained some basic programming knowledge (writing of simple scripts and functions in Matlab), we will move on to more advanced topics. These include programming and solving ordinary differential equation models (ODEs) and the concept of "vectorized thinking" while writing Matlab-code. Finally, calibration of parameters in ODE type of models using measured data will be discussed and examples will be given. The course also includes the basics of presenting your results (graphing) in various types of plots that can easily be drawn in Matlab. Participants will, of course, get hands-on experience with Matlab and write code themselves in a practical.


Programme

09:45     Coffee/Tea

10:00     Welcome

10:05     Introduction Matlab Basics (functions, variables, matrices, etc)

10:45     Advanced Programming (vectorised thinking, solving dynamic ordinary differential equation models in Matlab, parameter estimation for ODE-models)

12:00     Afternoon: Solving basic and advanced problems in Matlab - hands-on experience on a PC. Exercises will be provided, but you can also bring your own problems that you have encountered in your own research.

12:30     Lunch

15:00     Coffee/tea

16:30     End

BioSB Education Programme
This course is part of the Education Programme of BioSB, the Netherlands Bioinformatics and Systems Biology Research School, which offers  training and education in bioinformatics and systems biology. More information about BioSB can be found at www.biosb.nl<http://www.biosb.nl/> or via education at biosb.nl<mailto:education at biosb.nl>.


Dr. Celia W.G. van Gelder

Programme Manager Learning DTL/ELIXIR-NL Training
Education Manager BioSB

tel. +31613375327
e-mail: celia.van.gelder at dtls.nl
websites:  www.dtls.nl<http://www.dtls.nl/>, www.biosb.nl<http://www.biosb.nl/>
skype: celia.van.gelder

Postal address:
DTL
PO Box 19245
3501 DE Utrecht




Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629.
The Radboud university medical center is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.
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