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<small><font face="Helvetica, Arial, sans-serif"><b>NBIC PhD Course
on
Managing Life Science Information (2nd edition)<br>
<br>
</b>Course coordinators: Marco Roos, Scott Marshall<br>
<br>
</font></small><small><font face="Helvetica, Arial, sans-serif"><u>Date:</u>
17-21 October 2011 (one week of tutorials) and a final workshop
on
Friday 28 October 2011 to discuss project results<br>
<u>Location:</u> Science Park, Amsterdam<br>
<u>Registration:</u>
<a moz-do-not-send="true" class="moz-txt-link-freetext"
href="http://www.nbic.nl/education/nbic-phd-school/enrolment/">http://www.nbic.nl/education/nbic-phd-school/enrolment/</a><br>
<u>Website: </u><a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://www.nbic.nl/education/nbic-phd-school/course-schedule/managing-life-science-information/">http://www.nbic.nl/education/nbic-phd-school/course-schedule/managing-life-science-information/</a><br>
<br>
<br>
<br>
</font></small><small><font face="Helvetica, Arial, sans-serif">Did
you
ever suspect that the data that you need is somewhere but
neither discoverable nor accessible? <br>
Have you ever produced valuable
data that nobody can use anymore, including yourself? <br>
Have you ever
wondered how to create a federation of distributed data sources?
<br>
If you
do not want your data to end up in a data graveyard, and for
many other
information management issues, we have organised a course for
you.<br>
<br>
In this course we will teach you methods to make data shareable
and
self-describing. <br>
You will learn how:</font></small>
<br>
<div><span style="font-family: arial,sans-serif; font-size: 13px;
background-color: rgb(255, 255, 255);">
<div style="color: rgb(80, 0, 80);">
<ol>
<li style="margin-left: 15px;">the 'Linked Data' principle
works and
how it can be applied for 'meaningful' data integration<br>
</li>
<li style="margin-left: 15px;">to expose your local data
(including
relational databases) for use in other systems.</li>
<li style="margin-left: 15px;">Web Services can be used to
analyse
data from anywhere.</li>
<li style="margin-left: 15px;">text mining can be applied to
link
resources such as biobanks.</li>
<li style="margin-left: 15px;">human knowledge can be made
computable
and associated with data.</li>
<li style="margin-left: 15px;">to make your data publishable
artifacts for which you can get scientific credit.</li>
<li style="margin-left: 15px;">to use tools such as <a
moz-do-not-send="true" href="http://www.molgenis.org/">MolGenis</a>,
<a moz-do-not-send="true"
href="http://www.taverna.org.uk/">Taverna</a>, <a
moz-do-not-send="true"
href="http://www.w3.org/TR/sparql11-query/">SPARQL</a>,
<a moz-do-not-send="true"
href="http://www4.wiwiss.fu-berlin.de/bizer/d2rq/">D2RQ</a>,
<a moz-do-not-send="true"
href="http://tinyurl.com/swobjects-swat4ls">SWObjects</a>,
<a moz-do-not-send="true"
href="http://bioportal.bioontology.org/">NCBO's
BioPortal</a>, <a moz-do-not-send="true"
href="http://www.biosemantics.org/index.php?page=anni-2-0">Anni</a>,
<a moz-do-not-send="true" href="http://larkc.org/">LarKC </a>(Large
Knowledge
Collider).</li>
<li style="margin-left: 15px;">to collaboratively solve an
information management problem</li>
</ol>
</div>
</span><br>
<small><font face="Helvetica, Arial, sans-serif"><u>Program</u>
(tentative)<br>
<br>
Monday: <br>
Introduction by leading Semantic Web expert Prof. Dr. Frank
van
Harmelen; Hands-on with RDF and SPARQL (Scott Marshall)<br>
Tuesday: <br>
XML, RDF, Minimal information models, and exposing data from
local
databases (Scott Marshall); hands-on with MolGenis (Erik Roos)<br>
Wednesday: <br>
Data integration with Web Services (Katy Wolstencroft);
hands-on with
Taverna (Katherine Wolstencroft)<br>
Thursday: <br>
Knowledge management and nano-publication (Andrew Gibson);
hands-on
federated queries with SWObjects (Scott Marshall)<br>
Friday: <br>
Text mining for linking biobanks and hands-on with Anni (Marco
Roos,
Kristina Hettne); Hands-on with LarKC (Spyros Kotoulas);
DRINKS!!!<br>
</font></small><br>
<small><font face="Helvetica, Arial, sans-serif"><br>
</font></small></div>
<br>
<pre class="moz-signature" cols="72">--
Dr. Celia W.G. van Gelder
Coordinator Education CMBI
Projectleader Education NBIC
tel. +31-(0)24-3666120
e-mail: <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:C.vanGelder@cmbi.ru.nl">C.vanGelder@cmbi.ru.nl</a>
websites: <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="http://www.cmbi.ru.nl">www.cmbi.ru.nl</a>, <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="http://www.nbic.nl">www.nbic.nl</a>
Postal address:
CMBI 260
Radboud University Nijmegen-Medical Centre /NCMLS
PO Box 9101, 6500 HB Nijmegen
The Netherlands
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