October 2015 - BBClist - maillist.psb.ugent.be

Vacature Hogeschool Leiden
by Stelling, Klaasje 11 Dec '15

11 Dec '15

Geachte heer/mevrouw, Het cluster Techniek van Hogeschool Leiden is op zoek naar inspirerende en onderzoekende "Docent(en)/onderzoeker(s) Bio-Informatica (1,2 fte - 2,0 fte)". Kijk voor meer informatie de bijlage of onze website, http://www.hsleiden.nl/over-hl/werken-bij/vacatures/vacatures Met vriendelijke groet, Klaasje Stelling Adviseur HRM Hogeschool Leiden Afdeling HRM Zernikedreef 11, kamer F2.006/F2.008/F2.013 Postbus 382, 2300 AJ Leiden Mobiel: 06-52781722 Website: www.hsleiden.nl<http://www.hsleiden.nl/> Is het écht nodig deze e-mail te printen? 'Hogeschool Leiden, jouw duurzame ruimte' Op deze e-mail zijn de voorwaarden van toepassing als vermeld op: The following conditions apply to this e-mail: http://www.hsleiden.nl/disclaimer-email

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job opportunities: Bioinformatics Tool Developers
by Alexander Botzki | VIB | 31 Oct '15

31 Oct '15

Dear all, We are happy to announce the opening of two positions at VIB. Bioinformatics Tool Developers VIB is looking to expand its institute-wide bioinformatics platform, BITS<http://www.bits.vib.be/>, with two bioinformatics tool developers to enhance and integrate VIB's flagship bioinformatics tools such as PLAZA<http://plaza.psb.ugent.be/>, iceLogo<http://iomics.ugent.be/icelogoserver/index.html> and SNPEffect<http://snpeffect.switchlab.org/>. We are looking for dedicated individuals to join the BITS team in Ghent who will jointly work in projects for several Bioinformatics groups at VIB (http://www.vib.be/en/research/scientists/Pages/default.aspx?category=Bioinf…) The candidate needs to have outstanding communication skills to establish a close working relationship with the bioinformaticians and developers within the VIB departments and the staff of the BITS core facility. The candidate will split his/her time between various VIB BioIT groups and may be required to travel to all VIB sites (Ghent, Leuven, Brussels, Antwerp, and Hasselt). The close relationship within VIB's BioIT community will allow the integration of cutting edge bioinformatics solutions aiming at higher visibility of VIB's bioinformatics achievements. You will participate actively in computational aspects of VIB's research projects which focus on the molecular mechanisms that are responsible for the functioning of the human body, plants, and microorganisms. The responsibilities include: * continued development, maintenance, testing and evaluation of VIB's computational biology tools (often written in different programming environments) * enable relevant VIB software to be maintained long-term * make "developed @ VIB" a mark of excellence and reliability * provide an interface between BITS and the bioinformatics community at VIB More information on the BITS and the VIB Bio Community can be found at: https://corefacilities.vib.be/bits and https://www.bits.vib.be/bioit-at-vib Profile * Master in computer science, bioscience engineering or equivalent * Knowledgeable of W3C standards and best practices in web development * Experience in programming (e.g. Python, Perl, PHP, Javascript), version control * Good working knowledge of databases and SQL * High level of competency with Python is an asset * Experience of working with Linux/unix environments and scripting * Track record of relevant experience in software development would be an asset * Excellent communication skills * Interest in applied biological research is a must, experience an asset * Solution-oriented attitude, able to work independently as well as in a team * Fluent in English Benefits: * Start date: as soon as possible * Duration: 2 year, possibility to extend upon evaluation * International environment in an academic context * A challenging and stimulating work environment, at the edge of IT technologies and the latest research innovations Please apply online on this web site<http://www.vib.be/en/jobs/Pages/Bioinformatics-Tool-Developers.aspx>. Best regards, Alex Alexander Botzki Manager BITS Core Facility Training coordinator ELIXIR-BE VIB BITS http://www.bits.vib.be Rijvisschestraat 126 9052 Zwijnaarde Belgium

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TPNC 2015: posters deadline 8 November
by GRLMC 31 Oct '15

31 Oct '15

*To be removed from our mailing list, please respond to this message with UNSUBSCRIBE in the subject line* **************************************************************************************** The 4th International Conference on the Theory and Practice of Natural Computing (TPNC 2015) invites authors to submit poster presentations. TPNC 2015 will be held in Mieres (Spain) on 15-16 December, 2015. See http://grammars.grlmc.com/tpnc2015/ Poster presentations are intended to enhance informal interactions with the conference participants, at the same time allowing for in-depth discussion. TOPICS Authors are encouraged to submit presentations displaying novel work in progress on: - nature-inspired models of computation, - synthesizing nature by means of computation, - nature-inspired materials, - information processing in nature, - applications of natural computing. Posters do not need to show final research results. Work that might lead to new interesting developments is welcome. KEY DATES Submission deadline: November 8, 2015 Notification of poster acceptance or rejection: November 15, 2015 SUBMISSION Please submit a .pdf abstract through: https://www.easychair.org/conferences/?conf=tpnc2015 It should contain the title, author(s) and affiliation, and should not exceed 500 words. PRESENTATION Posters will be allocated 10 minutes each in the programme for oral presentation. Moreover, they will remain hanging out during the whole conference for discussion. PUBLICATION Posters will not appear in the LNCS proceedings volume of TPNC 2015. However, they will be eligible for submission to the post-conference journal special issue in Soft Computing (Springer). REGISTRATION At least one author of each accepted poster must register to the conference. Their registration fare is reduced: 225 Euro (appr. half of the cheapest fare for regular participants). Contributors of regular papers who in addition get a poster accepted must register for the latter too.

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ECCB 2016: Save the date & Call for workshops/SIGs and tutorials
by Femke Francissen 30 Oct '15

30 Oct '15

*-------------------------------------------------------------------------------------------------------* *15th European Conference on Computational Biology (ECCB 2016)* *3-7 September 2016* World Forum Convention Center The Hague, The Netherlands Website: http://www.eccb2016.org/ ------------------------------------------------------------------------------------------------------- *Save the date & Call for workshops and tutorials* We would like to invite you to the 15th edition of the European Conference on Computational Biology (ECCB 2016) that will be held on 3-7 September 2016 in the historic city of The Hague in the Netherlands. The venue will be the World Forum. ECCB 2016 is the main European computational biology and bioinformatics conference, gathering over 1,000 scientists from a broad range of disciplines: e.g. molecular biology, molecular medicine, biophysics, biostatistics, systems biology. *Call for workshops and tutorials* You can now submit a proposal for a workshop or a tutorial at the ECCB 2016. The workshops and tutorials are planned on September 3 and 4, 2016 in the World Forum in The Hague, immediately preceding the ECCB 2016. *Deadline for proposal submission is: January 13, 2016.* *Workshops / SIGs* The workshops are expected to provide participants with an informal setting to discuss technical issues, exchange research ideas, and to share practical experiences on a range of focused or emerging topics in bioinformatics. SIGs are workshops organized by a special interest group. Each workshop should provide an interesting perspective on the cutting edge of a selected research field. Workshops may include any form of presentation such as talks or panel discussions. Read more <http://www.eccb2016.org/calls/workshops/> *Tutorials* The purpose of the tutorial program is to provide participants with lectures and hands-on training covering topics relevant to the field of bioinformatics. Each tutorial will offer participants an opportunity to learn about new areas of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas they are already familiar with. This call is an invitation for scientists and professionals working in the fields of bioinformatics and computational biology to submit proposals for high quality tutorials for ECCB 2016. Read more <http://www.eccb2016.org/calls/tutorials/> *Keynote speaker* Our first confirmed keynote speaker is Professor Hans Clevers (Princess Maxima Center for pediatric oncology). He won several awards including the Dutch Spinoza Award (2001). From 2012-2015 he was President of the Royal Netherlands Academy of Arts and Sciences (KNAW). Read more <http://www.eccb2016.org/speakers/hans-clever/> *Sponsor options* Exclusive platinum sponsorship still available! The platinum sponsorship package (cost: 15,000 €) is the premier sponsorship package for the ECCB 2016 with exclusive sponsor opportunities. The sponsor logo will be featured prominently on all conference materials, and the Platinum Sponsor will be referred to in all communication prior to the event. This is an excellent way to ensure that your brand reaches thousands of scientists, policy makers and other stakeholders. *Special offer for startup companies* We offer startup companies the Startup Booth Package for only 600 €, it is the possibility to introduce your company to a wide audience from Europe and beyond. Have a look at the leaflet <http://www.eccb2016.org/wp-content/uploads/2015/10/Startup-Booth-leaflet.pdf> . *Original ways to sponsor ECCB 2016!* Your logo on chocolates during coffee breaks, or on t-shirts during the morning run? Have a look at our sponsor brochure for the sponsor options. Should you have an original idea that is not included in the brochure, we are open to suggestions so please feel free to get in touch with us! Read more <http://www.eccb2016.org/sponsoring/> The conference is hosted by: BioSB research school <http://www.biosb.nl>, Dutch Techcentre for Life Sciences <http://www.dtls.nl> and co-organised by: Vrije Universiteit Amsterdam, Delft University of Technology Contact: info(a)eccb2016.org

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BioSB Course Discovering Systems Biology Principles, 23-27 November 2015, Amsterdam
by Femke Francissen 30 Oct '15

30 Oct '15

*BioSB Course Discovering Systems Biology Principles, 23-27 November 2015, Amsterdam* *Website:* http://biosb.nl/education/course-portfolio-2/course-discovering-systems-bio… *Coordinators:* Frank Bruggeman (VU), Celia van Gelder (BioSB, celia.van.gelder(a)biosb.nl) *Registration: * http://biosb.nl/education/course-portfolio-2/course-discovering-systems-bio… . *Please note that this course is free of charge for PhDs who are or will become a member of the BioSB research school, and with a reduced fee for other researchers who are or will become a member of BioSB. *More information about the BioSB membership can be found here: http://biosb.nl/about/members/biosb-membership-information/ . *Course description* A large part of systems biology is concerned with studying how the molecular networks inside living cells function. What they do. How their molecular interactions, including feedback circuitry, give rise to cellular properties, such as sensing, adaptation, division and death, that transcend those of single molecules. This includes figuring out how gene mutations, causing changes in proteins, cause networks, and their cellular hosts, to malfunction. In order to do this, systems biology focusses on the dynamics of molecular networks, using quantitative experiments and mathematical modeling. Mathematical models help systems biologists to figure out: i. how molecular properties relate to the functional, systemic properties of molecular networks, and ii. how molecular networks assist in the survival and functioning of cells. This 1-week course serves as an introduction to mathematical modeling as it is used in systems biology. *Target audience* This course does not require any introductory reading or courses, it should be accessible to students with diverse backgrounds. *Course programme* We start from physical and chemical principles of molecules, cells and reactions. Next, you will learn how you can relate the changes in the concentrations of molecules over time to the activity of reactions and the underlying molecular properties. You will be introduced to enzyme kinetics and the dynamics of small enzyme systems, in metabolism and signal transduction. We also briefly deal with models of genetic circuits. We will illustrate a number of unexpected, functional properties of molecular networks that can be studied with simple mathematical models. You will make and analyse models yourself, on paper and with software. We will close the week with a short overview of some more advanced topics, to introduce you to approaches and concepts that you will often hear about in systems biology. The course material concerns a syllabus (with exercises and answers), handouts, and computer exercises. At the end of this 1-week course, you will have a good understanding how mathematical models are made, what biology they require and how you can use them in systems-biology research. *Course schedule* *Monday, Nov 23* 09:30-10:30 Diffusion 11:00-12:30 Diffusion 13:30-15:00 Mass balances and kinetics 15:30-17:00 Mass balances and kinetics *Tuesday, Nov 24* 09:30-10:30 Mathematica or JWS online, basics 11:00-12:30 Mathematica or JWS online, basics 13:30-15:00 Simulating differential equation models 15:30-17:00 Simulating differential equation models *Wednesday, Nov 25* 09:30-10:30 Enzyme kinetics 11:00-12:30 Enzyme kinetics 13:30-15:00 Rate characteristics 15:30-17:00 Supply demand theory and ultrasensitivity *Thursday, Nov 26* 09:30-12:30 Cool systems: kinetic proofreading, TF-DNA search, robustness, fold-change detection, optimal gene expression 13:30-17:00 Making models in JWS online or Mathematica *Friday, Nov 27* 09:30-10:30 Stoichiometric analysis, N, K, L 11:00-12:30 Flux balance analysis 13:30-15:00 Stability analysis, phase-plane analysis 15:30-17:00 Bistability and oscillations with JWS Online or Mathematica *BioSB Education Programme* This course is part of the Education Programme of BioSB, the Netherlands Bioinformatics and Systems Biology Research School, which offers training and education in bioinformatics and systems biology. More information about BioSB can be found at www.biosb.nl or via education(a)biosb.nl.

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PhD/postdoctoral position in bioinformatics/ computational systems biology (BIG N2N, Ghent University)
by Katrijn Vannerum 30 Oct '15

30 Oct '15

PhD-student and/or postdoctoral position in bioinformatics/ computational systems biology available (Bioinformatics Institute Ghent/ Ghent University/ Dept Information Technology) Topic: Network-based data-integration Project outline Candidates interested in working in a highly interdisciplinary environment are invited to apply. The current job opening focuses on the development and use of methods to study the molecular mechanisms underlying the emergence of complex phenotypes in evolving ‘clonal’ systems. Applications, involve studying the origin of community behavior in bacterial populations, studying how bacteria evolve resistance to antibiotics, studying drug sensitivity of cancer cell lines, cancer subtyping and driver identification. Requirements Bioinformatics/bioengineering/biochemistry background with a genuine interest in algorithmic research, data mining and machine learning OR Computer science/engineering background with a genuine interest in bioinformatics and biology Programming skills are a prerequisite Contact details Send your application to Kathleen.Marchal(a)intec.ugent.be<mailto:Kathleen.Marchal@intec.ugent.be> When applying, please ensure you include a CV, including detailed transcripts of all university study results, a list of publications and the names and addresses of at least two persons that can be approached as references. For more information also see http://bioinformatics.psb.ugent.be/DBN/. Closing date 31 Dec 2015 -- Prof. Kathleen Marchal Dept. of Plant Biotechnology and Bioinformatics, Ghent University Dept. of Information Technology, IMinds, Ghent University http://bioinformatics.psb.ugent.be/DBN Zuiderpoort Office Park, Blok C0 Gaston Crommenlaan 8 bus 201 B-9050 Gent, Belgium

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BioSB course on Managing and Integrating Life Science Information, 30 Nov - 4 Dec, Utrecht, the Netherlands
by Celia.vanGelder＠radboudumc.nl 29 Oct '15

29 Oct '15

BioSB Course on Managing and Integrating Life Science Information: Approaches using Linked Data and Semantics (4th edition) Course coordinators: Marco Roos, Katy Wolstencroft Date: 30 November - 4 December 2015 Location: SURF, Utrecht, the Netherlands Website: http://biosb.nl/education/course-portfolio/course-managing-and-integrating-…. Registration: http://biosb.nl/education/course-portfolio/course-managing-and-integrating-… .Please not that this course is free of charge for PhDs who are or will become a member of the BioSB research school, and with a reduced fee for other researchers who are or will become a member of BioSB. More information about the BioSB membership can be found here: http://biosb.nl/about/members/biosb-membership-information/ . Course flyer: http://biosb.nl/wp-content/uploads/2013/08/Wolstencroft_Roos_Course_2015_Ju… Target audience This course is for bioinformaticians who would like to learn about leading-edge data and knowledge integration solutions. You will learn (1) powerful and flexible approaches to data and information management for your bioinformatics application (Semantic Web and Linked Data), (2) how to work with data across remote locations, for instance by applying Web Services and workflows, (3) how to publish your own data to make it available and reusable for the rest of the community. We assume a basic understanding of bioinformatics programming for the hands on sessions. It would suit previous user participants of BYOD<http://www.dtls.nl/fair-data/byod/> meetings who would like more hands-on experience of data integration. It would also suit data providers who would like to explore new ways of serving their data or integrating it with other resources Description The amount of Life Science data available in the public domain is a vast and growing resource for bioinformatics research. There are over 20 million papers in PubMed and over 1600 biological databases. In many cases finding and applying the information from these resources is far from trivial. Following this course will show you techniques for working with these distributed resources, which includes using the web of Linked data and scientific workflows. It will also focus on methods for using or linking your own data into this large distributed Semantic Web of resources, in order to ensure that your data is FAIR<http://www.dtls.nl/fair-data/byod/> (Findable, Accessible, Interoperable and Reusable). This course introduces modern techniques for the management of life science data and knowledge for bioinformatics applications. After following this course students should be able to start creating their first applications based on these technologies or make more informed design decisions for their current application. In this course you will learn about: 1. Linked Data and the Semantic Web technologies that underpin it 2. How you can use Linked Data for data and knowledge integration in the Life Sciences 3. Available Linked Data resources in the public domain and large-scale projects that use these resources 4. How you can integrate your own data with Linked Data resources 5. How you can combine data integration and analysis over distributed resources, using Web Services and workflows Lecturers: Marco Roos, Katy Wolstencroft, Frank van Harmelen, Paul Groth, Simon Jupp, Jesse van Dam, and others TBC . Programme Monday 30/11 - Introduction to Semantic Interoperability and the Semantic Web 09:00-09:30 Coffee/Tea 09:30-09:45 Introduction and workshop goals 09:45-11:00 Semantic Web Primer 11:00-11:15 Coffee/Tea 11:15-12:30 An introduction to Linked Data 12:30-13:00 Lunch 13:00-15:00 Introduction to creating RDF and using a triple store (hands on session) 15:00-15:30 Surf Sara services for researchers 15:30-........ Welcome drinks Tuesday 01/12 - The Semantic Web in Use 09:30-10:00 Define course projects/interests (BYOD) 10:00-10:45 An Introduction to Constructing SPARQL Queries 10:45-11:00 Coffee/Tea 11:00-12:30 SPARQL hands-on session 12:30-13:30 Lunch 13:30-14:30 An Introduction the the EBI RDF platform and Ontologies 14:30-16:30 Querying the EBI RDF platform, hands-on Wednesday 02/12 - The Semantic web in use - systems and guidelines 09:30-10:30 The OpenPHACTS project 10:30-10:45 Coffee/Tea 10:45-12:30 Openphacts hands on session 12:30-13:30 Lunch 13:30-14:30 Guidelines and best practices for Linked Data 14:30-16:30 Hands on session 16:30-17:00 Wrap-up Thursday 03/12 - Making Data Understandable and Searchable 09:30-10:30 An Introduction to Describing and Annotating Data: Case Study in systems Biology 10:30-10:45 Coffee/Tea 10:40-12:30 Using tools for annotating and describing data - hands on session 12:30-13:30 Lunch 13:30-14:30 Ontologies in depth 14:30-16:30 Ontology hands-on 16:30-17:00 Wrap-up Friday 04/12 - Using, Integrating and Analysing Data 09:30-10:30 An introduction to scientific workflows and distributed analyses 11:00-12:30 Designing and executing Taverna Workflows, hands-on 12:30-13:30 Lunch 13:30-15:00 Hands-on: Data integration with linked data (BYOD wrap up) 15:00-15:30 BYOD reports 15:30-16:15 The added value of FAIR data - Closing keynote 16:15-16:45 Wrap-up Dr. Celia W.G. van Gelder Education Manager BioSB Coordinator Education CMBI Programme Manager Learning DTL/ELIXIR-NL tel. +31613375327 e-mail: Celia.vanGelder(a)radboudumc.nl<mailto:Celia.vanGelder@radboudumc.nl> websites: www.nbic.nl<http://www.nbic.nl/>, www.biosb.nl, www.cmbi.ru.nl<http://www.cmbi.ru.nl/>, www.dtls.nl Postal address: CMBI 260 Radboud University Nijmegen-Medical Centre PO Box 9101 6500 HB Nijmegen The Netherlands Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629. The Radboud university medical center is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.

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BBC2015 Student Symposium
by Bart Cuypers 22 Oct '15

22 Oct '15

Dear All, We are organizing a bio-informatics/computational biology student symposium in Antwerp soon. The symposium is a satellite meeting of the BeNeLux Bio-informatics conference (http://bbc2015.be/ ) and will take place Sunday 6th of December Afternoon in the Institute of tropical medicine, Antwerp. The goal of this symposium is to bring young bio-informatics researchers together (master students, PhD Students, young post docs) and give them the opportunity to build a network and present their work. There are slots available for talks and posters. Abstracts can be submitted via the symposium website: http://bbc2015.be/ss_about.html#<http://bbc2015.be/ss_about.html> . The symposium will be followed by a social event in the city of Antwerp. Keynotes are Prof. dr. Stijn Deborggraeve from the Institute Of Tropical Medicine and dr. Geert Vandeweyer from the University of Antwerp and the center of medical genetics, Antwerp. Timeline: 01/11/2015 Abstract submission deadline 15/11/2015 Registration deadline 06/12/2015 Student symposium takes place Do not hesitate to contact me if you have any questions, Kind Regards, Bart Cuypers Unit of Molecular Parasitology Department Of Biomedical Sciences Institute of Tropical Medicine Nationalestraat 155 B-2000 Antwerpen Belgium Mail: bcuypers(a)itg.be<https://mail.uantwerpen.be/owa/redir.aspx?C=lThoxYjNGUi4c9YEzGFx5xdCacb4vtA…> Tel.: 0032 3 247 63 96 Skype: bart-cuypers [image002]<http://www.linkedin.com/pub/bart-cuypers/57/b50/547>[image003]<https://twitter.com/cuypersb>[UAsmall]<https://www.uantwerpen.be/bart-cuypers/> P Please consider the environment before printing this e-mail Disclaimer: Http://www.itg.be/disclaimer Directions to our location(s): http://g.co/maps/ua89b

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Job opportunity: Bioinformatics Project Manager @ Diagenode
by Vincent Botta 22 Oct '15

22 Oct '15

Context: Diagenode is an international biotech company that develops and commercializes innovative instruments and reagents systems for life science research and molecular diagnostics. Founded in 2003, the Group is headquartered in Liege (Belgium), with a subsidiary in Denville, NJ, USA. Diagenode, the leader in the field of epigenetics, provides full solutions for your chromatin immunoprecipitation and DNA methylation research. Our products include sonication instruments (Bioruptor®), automated systems (IP-Star®), kits for chromatin immunoprecipitation (ChIP) and DNA methylation analysis, and high quality antibodies. Our goal is to make epigenetics research accessible and to ensure consistent data in every experiment. For its Epigenetics division and under the supervision of the Epigenetics R&D Manager, Diagenode is looking for a highly motivated, team-orientated individual Bioinformatics Project Manager. Brief posting description: * Interact directly with customers and lend scientific expertise toward understanding and assessing customers’ needs, communicating progress, explaining significance of results, and troubleshooting technical issues * Generate professional technical reports for delivery to customers in a timely manner to meet sales delivery schedules * Contribute expertise toward development of value-added improvements to existing analysis pipelines and technical reports based on emerging industry technologies and customer feedback * Work in a team of bioinformaticians with complementary skills on ongoing biological projects utilizing Next-Generation Sequencing (NGS) focused on epigenetic analyses * Develop bioinformatics projects in line with the diverse needs of the department Job description: * Oversees bioinformatics work for ChIP-seq and methylation studies (e.g. ChIP-seq, RRBS, MeDIP-seq, hMeDIP-seq) projects in the R&D Epigenetics department of Diagenode * Coordinate project timelines and progression for ~15 projects at any given time * Manages contact with external customers * Becomes the key contact person for bioinformatics-related projects with academic and industrial partners * Coordinates contact with customers related to bioinformatics projects * Work with Diagenode developers to design and enhance the epigenetic bioinformatics software lab’s pipeline to meet customer’s requirements Required qualifications: * Master degree in Bioinformatics preferred * Minimum 3 years of experience in working with NGS data analysis, ideally in applications related to Epigenetics (ChIp and Methylation), and with a strong knowledge of the related biological studies * Proven experience in project management * Experience with coding through R, SHELL, Python and Perl languages under Linux environment * Experience with statistical and database software * Fluent in English, French or other languages are a plus * Strong organizational and time management skills, well-organized, independent * Rigour and attention to details * Excellent interpersonal skills * Excellent oral and written communication skills Eligibility criteria: All nationalities, including Belgian, the condition is to have spent less than 12 months over the last three years in Belgium. Location: Diagenode headquarters in Liège Contract: Fixed-term contract (36 months) - Possible extension in permanent contract In addition to a highly interactive and stimulating environment, Diagenode also provides competitive salaries. Diagenode is an equal opportunity employer and promotes diversity throughout its workforce. If you are interested, please send your application with a full detailed CV and a motivation letter, by email only, to job(a)diagenode.com More information: https://www.diagenode.com/pages/careers

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Gauging interest for a GATK workshop in Edinburgh on 14-15 April 2016
by Bert Overduin 22 Oct '15

22 Oct '15

Dear all, After last year's successful Edinburgh Genomics workshop on GATK ( https://www.broadinstitute.org/gatk/) I am happy to announce that the GATK team has agreed to teach again in Edinburgh! To gauge if there is enough interest to have them come over all the way from Boston, I have set up a short survey, which can be found at: https://www.surveymonkey.com/r/J7NH3V5 Note that the workshop will be most likely on Thursday 14 and Friday 15 April 2016. Cost (including lunch and refreshments) will probably be around £50/day. Also note that there are plans to give a similar workshop on Monday 18 and Tuesday 19 April in Oxford. *Important (especially for people who did attend the 2015 workshop!):* Before filling in the survey, please have a look at the information below from the GATK team: "The main topics of the workshop are still much the same (Best Practices for variant discovery), but we've expanded the parts that cover pipeline implementations and quality control, and we're adding new materials on somatic variant calling (SNPs, indels and CNVs). I'd guesstimate that there's about 25% new content in the talks part. We've also completely overhauled and expanded our hands-on tutorials portfolio (basics of variant discovery + advanced filtering and evaluation), and in the near future we'll be adding a module on developing pipelines with a new workflow scripting and execution system that is a lot more accessible than Queue." With kind regards, Bert -- Bert Overduin, PhD TRAINING AND OUTREACH BIOINFORMATICIAN Bert.Overduin(a)ed.ac.uk EDINBURGH GENOMICS The University of Edinburgh Ashworth Laboratories The King's Buildings Charlotte Auerbach Road Edinburgh EH9 3FL Scotland, United Kingdom tel. +44(0)1316507403 http://genomics.ed.ac.uk The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

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