January 2021 - BBClist - maillist.psb.ugent.be

PhD position in Integrating of multiple -omics datasets
by Claesen Jürgen 04 Jun '24

04 Jun '24

Dear all, SCK CEN and UHasselt are looking for candidates for a PhD project with the title: "Integromics - Towards integration of big biomolecular data to enable systems biology" Description The last decades, development of high-throughput technologies such as next-generation sequencing, microarrays and mass spectrometry has led to a paradigm shift in biology and life sciences. Where previously one biomolecule (for example, a gene, or a protein) was studied as a single entity, these experimental techniques allow to study a set of biomolecules (for example, the genome or the proteome) in one go and in a limited amount of time. While, at first, experiments were analyzed independently from each other, combining information of several experimental techniques, and correlating them with environmental and/or clinical parameters, is, nowadays, of great interest. As a consequence, novel statistical and computational methodologies for the analysis of multi-omics datasets have to be developed, allowing a multi-dimensional view on complex biological processes. In this PhD project, we aim at the development of computational methods for the analysis of multi-omics datasets, that are commonly generated by the three biology units of SCK*CEN, which will improve the understanding and valorization of the data, and which will keep the biology units up to date with current developments in biology and bioinformatics. Profile and diploma As a doctorate researcher you will join the dynamic bioinformatics team at SCK CEN and CenStat (UHasselt). A successful candidate should have : * A master degree in biostatistics/applied statistics/bioinformatics/statistical bioinformatics. * You are acquainted with statistical methodologies and had exposure to computer programming in SAS/R/Winbugs/Python. * You can work independently and within a team. * You have excellent communication skills. * You are interested to develop new methodology from both theoretical and applied aspects. * You enjoy working in a multidisciplinary and multicultural environment. * You are willing to closely collaborate with biologists/biostatisticians. * You speak and write English fluently. * You have work experience with at least two different "omics" platforms. For more information contact: Dr. Claesen Jürgen (SCK-CEN), jclaesen(a)sckcen.be<https://academy.sckcen.be/en/Mailform?contactid=b22040b5-cf18-496f-a82a-3bc…> Prof. Shkedy Ziv (Hasselt University), ziv.shkedy(a)uhasselt.be<https://academy.sckcen.be/en/Mailform?contactid=51ae7733-8006-4347-b211-9a4…> Link to the project in SCK-CEN: https://academy.sckcen.be/en/Your_thesis_internship/AllTopics/Integromics--… Kind Regards, Jürgen

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NERC Bursaries for Edinburgh Genomics Courses
by TRAIN edgenomics-training 02 Mar '22

02 Mar '22

Dear All We are pleased to announce we have a number of bursaries available to cover up-to the full fees of any of our upcoming bioinformatics courses. These bursaries are available to UK based students or researchers funded by the NERC or working on research that falls under the remit of the NERC (https://nerc.ukri.org/research/portfolio/remit/) Bursaries are available for any of our courses (see below) but are available for a LIMITED TIME ONLY: They are available for any course booked BEFORE 27th MARCH. So please don't wait to sign up! Our upcoming courses: Linux for Genomics, 13th March - An introduction to working on the command line, running commands and handling data relevant to bioinformatics. https://genomics.ed.ac.uk/services/linux-genomics R for Genomics, 14-15th March - An introduction to the statistical environment R, taking you from the very basics to writing basic functions and creating beautiful figures with ggplot2 https://genomics.ed.ac.uk/services/r-genomics Introduction to Python for Biologists, 18-22 March - This introductory course gives an overview of the language with an emphasis on practical problem-solving, using examples and exercises drawn from various aspects of bioinformatics work. https://genomics.ed.ac.uk/services/introduction-python-biologists-0 Data Manipulation and Visualisation with Python, 08 - 12 April - Python has a many high-quality libraries for working with scientific data. In this workshop we will see how to leverage these libraries to efficiently work with and visualise large volumes of data. https://genomics.ed.ac.uk/services/data-manipulation-and-visualisation-pyth… Introduction to RNA-seq Data Analysis, 9-10th May - This two-day course takes you through a tried-and-tested workflow for analysing RNA-seq data, from read mapping and QC to differential expression and result visualisation. https://genomics.ed.ac.uk/services/introduction-rna-seq-data-analysis If you think you are provably eligible for one of these bursaries, sign up to your desired course through the link provided and we will be in contact regarding fees. Kind Regards Nathan Medd Training and Outreach Manager - Edinburgh Genomics G.06, Ashworth Laboratories, Charlotte Auerbach Road, The King's Buildings, The University of Edinburgh, EH9 3FL, Edinburgh, Scotland Edinburgh Genomics' Privacy Notice can be viewed at: http://genomics.ed.ac.uk/about-us/privacy-notice This email and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender. The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

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Postdoc microbial bioinformatics
by Kupczok, Anne 26 Jan '21

26 Jan '21

Dear colleagues, The Evolutionary (Meta-)genomics group in the Bioinformatics Group at Wageningen University invites applications for a postdoc position. The position is for one year with the possibility for extension depending on funding. We are interested in the evolution and function of CRISPR associated (Cas) genes in archaea. CRISPR-Cas is the adaptive immune system of bacteria and archaea and, in addition, some cas genes occur outside of CRISPR-Cas loci, where they are potentially involved in functions beyond defense. For example, casposons are mobile genetic elements encoding Cas1. We are interested in detecting such non-canonical cas genes in archaea, predicting their function, and studying their evolution. We offer the opportunity to develop the focus of the project with respect to own research interests. Candidate qualification and competences: PhD in bioinformatics or a related field; excellent background in high-throughput sequencing analysis and comparative genomics; interest in close collaborations with experimental biologists; high self-motivation; excellent English language skills; ideally background in microbial genomics, evolution, and mobile elements. The position is based at Kiel University and the project will be led by Dr. Anne Kupczok (Wageningen University, Netherlands) in collaboration with Prof. Ruth Schmitz-Streit (Kiel University, Germany). The project can be carried out at either place or also remotely. Applications should include a motivation letter (max. 2 pages), CV, publication list, and names and contact details of at least two referees in a single pdf. Evaluation of the applications will begin immediately and continue until the position is filled, with a desired starting date as early as possible. To apply or for enquiries regarding the position and research topic, please contact Anne Kupczok: anne.kupczok(a)wur.nl<mailto:anne.kupczok@wur.nl> http://www.wur.nl/en/Expertise-Services/Chair-groups/Plant-Sciences/Bioinfo… https://annecmg.github.io/ Please forward this announcement to suitable candidates. Best, Anne Kupczok -- Dr. Anne Kupczok Assistant Professor Bioinformatics, Department of Plant Sciences, Wageningen University http://www.wur.nl/en/Expertise-Services/Chair-groups/Plant-Sciences/Bioinfo…<https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.wur.nl…>

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Faculty position at Ghent University: professor in Big data science
by Yvan Saeys 21 Jan '21

21 Jan '21

Dear colleagues, The Department of Applied Mathematics, Computer Science and Statistics at Ghent University has an open professor position in the field of Big data science. This position in the rank of assistant professor, funded by the Special Research Fund, is a tenure track appointment for a period of 5 years with a focus on research and with a teaching load limited to no more than 8 ECTS credits per semester on average over a period of 3 years. Ghent University is one of the most important education and research institutions in the Low Countries. On a daily basis, over 9,000 staff members and 41,000 students implement its motto "Dare to Think". Ghent University's mission statement is characterised by qualitative education, internationally renowned research and a pluralistic social responsibility. More information can be found at https://career012.successfactors.eu/career?company=C0000956575P&career_job_… Best regards, Yvan Saeys -- =============================================================================== Prof. dr. Yvan Saeys VIB Group Leader Data mining and modeling for biomedicine UGent Department of Applied Mathematics, Computer Science and Statistics Krijgslaan 281, S9, B-9000 Gent Inflammation Research Center, a VIB-UGent Department Technologiepark-Zwijnaarde 71 , B-9052 Zwijnaarde , Belgium Tel : +32(0)9 331 37 40 Fax : +32(0)9 221 76 73 Mailto: yvan.saeys(a)ugent.be http://www.dambi.ugent.be ===============================================================================

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Two open positions at the Bio2Byte group, IB2/VUB, Brussels
by Wim VRANKEN 21 Jan '21

21 Jan '21

Dear all, Our Bio2Byte group at the VUB and the Interuniversity Institute of Bioinformatics in Brussels works on the prediction of protein characteristics, and the interpretation of these predictions in relation to life science problems (see https://bio2byte.be/) We are now launching a project, together with UGent and UCL, to investigate the proteome-scale relationships between the post-translational modifications (PTMs) of proteins, their sub-cellular location, their interactions and their biophysical characteristics. If you want to join this project, and work in an internationally oriented research group focused on team work and collaborations, we offer: - a PhD/postdoc research position in MD and structural bioinformatics - a software developer to support our online services and development of prediction tools The positions are immediately available, more information on them, and how to apply, can be found here: https://www.bio2byte.be/opportunities Please also forward this information to anyone you think might be interested! Best regards, Wim --------------------------------------------------------------------------------------- Prof. Dr. Wim Vranken Tel: +32 (0)2 6291952 (VUB) VUB - Building E, 5th Floor, E5.02, Pleinlaan 2 1050 Brussels, Belgium Structural Biology Brussels/Artificial Intelligence/General Chemistry/Biomedical sciences Research professor - http://bio2byte.be/ ULB-VUB - Interuniversity Institute of Bioinformatics in Brussels (IB)2 Member and former director - http://ibsquare.be/ ---------------------------------------------------------------------------------------

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ELIXIR Train-the-Trainer workshop
by Tuur Muyldermans 20 Jan '21

20 Jan '21

Dear, ELIXIR Belgium is pleased to announce a Train-the-Trainer<https://training.vib.be/all-trainings/train-trainer> workshop. This course is targeted at individuals involved in teaching Life Sciences, bioinformatics and related fields. The programme aims to give (new) instructors tools and tips for providing an enriching (online) learning experience to trainees, and to include best-practice guidance on course and training material development. The full programme is available and registrations are open via this link<https://training.vib.be/all-trainings/train-trainer>. The workshop runs from Monday 29 March to Thursday 1 April, afternoon sessions from 13:30-17:00. Best regards, Tuur Muyldermans On behalf of ELIXIR Belgium Tuur Muyldermans - ELIXIR Bioinformatics Trainer ELIXIR Belgium | VIB Bioinformatics Core Lo²cus Gent Researchbuilding FSVM 2 Technologiepark 75, 9052 Zwijnaarde www.elixir-belgium.org<https://www.elixir-belgium.org/> | https://corefacilities.vib.be<https://corefacilities.vib.be/> Subscribe to our mailing list<http://eepurl.com/cl-xOX> [cid:image002.png@01D6EF40.D91A8E70]

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vacancy Project Lead Bioinformatics and Data Science
by Camillo Berenos 19 Jan '21

19 Jan '21

Dear all, I would like to bring to your attention a new role as Project Lead Bioinformatics and Data Science in our growing R&D team at Dummen Orange (a major ornamental breeding compancy) based in De Lier, the Netherlands. The focus would be on developing and applying pipelines for analysis of both genomic and image data. https://emea.dummenorange.com/site/nl/vacatures/detail?job=project-lead-bio… Could you please share this vacancy with your network? Academics without industry experience are especially encouraged to apply. *Camillo Berenos*

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BSC: Life Sciences vacancy
by BSC Human Resources 18 Jan '21

18 Jan '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Postdoctoral Researcher – AI/ML applications in Personalised Medicine (R2). Deadline: 16 March, 2021 Link here <https://www.bsc.es/join-us/job-opportunities/1621lscbr2> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/> http://bsc.es/disclaimer

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two staff positions computational biology
by Berend Snel 15 Jan '21

15 Jan '21

Dear Computational Biologists, On behalf of Prof. dr. Rob de Boer I would like to inform you that Theoretical Biology and Bioinformatics Utrecht is advertising two staff positions. See tbb.bio.uu.nl/positions.html One is a tenure track assistant/associate professor position Theoretical Biology. The other is a teaching position (for 2 years) to help set up a new Bachelor program Molecular and Biophysical Life Sciences. best wishes. Berend Snel

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BSC: Life Sciences vacancy
by BSC Human Resources 15 Jan '21

15 Jan '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Web developer and technician - Text Mining (RE1). Deadline: 28 February, 2021 Link here <https://www.bsc.es/join-us/job-opportunities/1320lstmre1> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/> http://bsc.es/disclaimer

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