October 2022 - BBClist - maillist.psb.ugent.be

PhD position in Integrating of multiple -omics datasets
by Claesen Jürgen 04 Jun '24

04 Jun '24

Dear all, SCK CEN and UHasselt are looking for candidates for a PhD project with the title: "Integromics - Towards integration of big biomolecular data to enable systems biology" Description The last decades, development of high-throughput technologies such as next-generation sequencing, microarrays and mass spectrometry has led to a paradigm shift in biology and life sciences. Where previously one biomolecule (for example, a gene, or a protein) was studied as a single entity, these experimental techniques allow to study a set of biomolecules (for example, the genome or the proteome) in one go and in a limited amount of time. While, at first, experiments were analyzed independently from each other, combining information of several experimental techniques, and correlating them with environmental and/or clinical parameters, is, nowadays, of great interest. As a consequence, novel statistical and computational methodologies for the analysis of multi-omics datasets have to be developed, allowing a multi-dimensional view on complex biological processes. In this PhD project, we aim at the development of computational methods for the analysis of multi-omics datasets, that are commonly generated by the three biology units of SCK*CEN, which will improve the understanding and valorization of the data, and which will keep the biology units up to date with current developments in biology and bioinformatics. Profile and diploma As a doctorate researcher you will join the dynamic bioinformatics team at SCK CEN and CenStat (UHasselt). A successful candidate should have : * A master degree in biostatistics/applied statistics/bioinformatics/statistical bioinformatics. * You are acquainted with statistical methodologies and had exposure to computer programming in SAS/R/Winbugs/Python. * You can work independently and within a team. * You have excellent communication skills. * You are interested to develop new methodology from both theoretical and applied aspects. * You enjoy working in a multidisciplinary and multicultural environment. * You are willing to closely collaborate with biologists/biostatisticians. * You speak and write English fluently. * You have work experience with at least two different "omics" platforms. For more information contact: Dr. Claesen Jürgen (SCK-CEN), jclaesen(a)sckcen.be<https://academy.sckcen.be/en/Mailform?contactid=b22040b5-cf18-496f-a82a-3bc…> Prof. Shkedy Ziv (Hasselt University), ziv.shkedy(a)uhasselt.be<https://academy.sckcen.be/en/Mailform?contactid=51ae7733-8006-4347-b211-9a4…> Link to the project in SCK-CEN: https://academy.sckcen.be/en/Your_thesis_internship/AllTopics/Integromics--… Kind Regards, Jürgen

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Virtual course: Systematising complex and combined metabolic analyses with COBREXA.jl
by Venkata Pardhasaradhi SATAGOPAM 28 Oct '22

28 Oct '22

Dear all, You may be interested in the virtual course “Systematising complex and combined metabolic analyses with COBREXA.jl” on constraint-based reconstruction and analysis (COBRA) of large metabolic networks using COBREXA.jl High-Performance Computing framework on November 15th. Feel free to contact Wei or Miroslav (in CC) for any questions. To learn more about the course and register please go here: https://permedcoe.eu/training/virtual-course-systematising-complex-and-comb… Best, Venkata — Dr. Venkata Satagopam Bioinformatics Core Luxembourg Centre For Systems Biomedicine (LCSB) University of Luxembourg Campus Belval, House of Biomedicine II 6, avenue du Swing L-4367 Belvaux T +352-466-644-6421 F +352-466-644-36421 venkata.satagopam(a)uni.lu<mailto:venkata.satagopam@uni.lu> http://lcsb.uni.lu ----- This message is confidential and may contain privileged information. It is intended for the named recipient only. If you receive it in error please notify me and permanently delete the original message and any copies. -----

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IRIBHM - ULB is hiring three postdocs
by DETOURS Vincent 28 Oct '22

28 Oct '22

Dear all, The IRIBHM, an institute from the Universite Libre de Bruxelles, is hiring three postdocs, including a computational biologist. See the announcements here: https://owncloud.ulb.ac.be/index.php/s/i94aCWkUVP2NuPH Feel free to forward this mail. All the best, Prof. Vincent Detours, Ph. D. IRIBHM - Université Libre de Bruxelles Bldg C, room C.4.116 ULB, Campus Erasme, CP602 808 route de Lennik B-1070 Brussels Belgium Phone: +32-2-555 4220 Fax: +32-2-555 4655 E-mail: vincent.detours at ulb.be

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BSC: New vacancies - November 2022
by Laura Delshams Munoz 25 Oct '22

25 Oct '22

Hello, My name is Laura Delshams, I am part of the HR team at the Barcelona Supercomputing Center - Centro Nacional de Supercomputación. I am contacting you because we have opened several vacancies in the Life Sciences and CASE departments, and we would be grateful if you could share them with your contacts: * Junior Research Engineer for Social Link Analytics (RE1) <https://www.bsc.es/join-us/job-opportunities/35122lsslare1> - Life Sciences: Deadline 16th of November * Web Front-end Developer (RE2) <https://www.bsc.es/join-us/job-opportunities/38122lsinbre2> - Life Sciences: Deadline 16th of November * Post-doctoral Researcher in Computer and Biomedical Data Science (R2-R3) <https://www.bsc.es/join-us/job-opportunities/40322lsiconbir2-3>- Life Sciences: Deadline 16th of November * CI/CD Research Engineer (RE2) <https://www.bsc.es/join-us/job-opportunities/27622casepnmre2> - CASE Department: Deadline 16th of November If you need further information regarding any of our vacancies, or you need any additional steps from my side in order to disseminate it, please let me know. Thank you! Best regards, -- Laura Delshams /Human Resources - Talent & Development Officer/ *Barcelona Supercomputing Center – Centro Nacional de Supercomputación* <mailto:anais.delastre@bsc.es>Tel. +34- 93 413 40 72<mailto:anais.delastre@bsc.es> <mailto:anais.delastre@bsc.es>laura.delshams(a)bsc.es <mailto:laura.delshams@bsc.es><http://www.bsc.es/> <http://www.bsc.es/>www.bsc.es <http://www.bsc.es/>

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Fellowship in Bologna
by Fabrizio Pucci 25 Oct '22

25 Oct '22

Dear all, Please find below a message on behalf of Emiodio Capriotti on a fellowship in Bologna. Best, Fabrizio Pucci, 3BIO, École polytechnique de Bruxelles, ULB Interuniversity Institute of Bioinformatics in Brussels (IB)2 >>> Research Associate - Department of Pharmacy and Biotechnology, University of Bologna <<< The BioFolD unit (https://biofold.org) at the University of Bologna is seeking a Research Associate with programming skills in the field of bioinformatics. The ideal candidate should be able to analyze DNA and protein sequence as well as protein three-dimensional structure to develop new methods for predicting the impact of genetic variants. We offer a 12 moths fellowship starting on November 2022 Qualifications Master in Bioinformatics, Physics, Mathematics, Computer Science and related degrees. How to apply: If you are interested please contact Emidio Capriotti ( emidio.capriotti(a)unibo.it) The deadline for the submission of the application is November the 6th. Online announcement in Italian is available at https://bandi.unibo.it/ricerca/assegni-ricerca?id_bando=65676

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Hartwig is hiring!
by Daphne van Beek 21 Oct '22

21 Oct '22

Hi all, Hartwig is hiring! We're looking for a Senior Software Engineer and a Software Developer to help us advance our work to get the right patient the right treatment at the right time. We've been working for the past couple of years on building an extensive database and a cutting-edge toolset that is quick, cheap and the best for our data. We're a very ambitious group of people, so we're looking to expand to make our dreams come true. Are you motivated to help us realise our mission? Apply using the below links! Senior Software Engineer: https://lnkd.in/e4eiaNUi Software developer: https://lnkd.in/euht2bCe With kind regards, Daphne van Beek IT Manager Absent on Monday [Hartwig Medical Foundation]<https://www.hartwigmedicalfoundation.nl/en/> A Science Park 408, 1098 XH Amsterdam T +31 (0)20 226 9712 W hartwigmedicalfoundation.nl<https://www.hartwigmedicalfoundation.nl/en/> | oncoact.nl<https://oncoact.nl/?lang=en> N Subscribe to our newsletter<https://mailchi.mp/475bfde5c6f3/nieuwsbrieven-hartwig-medical-foundation> [Facebook]<https://www.facebook.com/HartwigMedicalFoundation> [LinkedIn] <https://www.linkedin.com/company/hartwig-medical-foundation> [Twitter] <https://twitter.com/hartwigmedical> [Instagram] <https://www.instagram.com/hartwigmedicalfoundation/?hl=en> [YouTube] <https://www.youtube.com/channel/UCK8juCiUGC1OsEXPtdEEwPA> It is our mission to realize that every cancer patient receives a personalized treatment using a complete DNA test<https://oncoact.nl/?lang=en>.

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Vacancy bioinformatician / computer scientist - genomics data infrastructure
by Kevin Vanneste 18 Oct '22

18 Oct '22

Dear all, The Bioinformatics Platform at the Belgian Institute of Health (www.sciensano.be<http://www.sciensano.be>) currently has a vacancy for a bioinformatician or a computer scientist to work on setting up services and infrastructure within the context of the Genomics Data Infrastructure project. More info and applications are available on our job site: https://jobs.sciensano.be/content/jobpage.asp?a=DETAIL&jdkid=1029&l=DUTCH Sincerely, K Kevin Vanneste, PhD Senior scientist - Responsible Bioinformatics Platform Transversal activities in Applied Genomics (TAG) T + 32 2 642 50 65 [cid:image001.jpg@01D4595B.6D6E05D0] Rue Juliette Wytsmanstraat 14 * 1050 Brussels www.sciensano.be<http://www.sciensano.be/> P Please consider the environment before printing this e-mail

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EMBL-EBI Postdoctoral Fellowship - Protein Science Machine Learning with AstraZeneca
by Sergio Martinez Cuesta 18 Oct '22

18 Oct '22

Postdoc for a recently graduated PhD in computational biology / structural bioinformatics. https://www.embl.org/jobs/position/EBI02081 The aim of the project, which is a collaboration between EMBL-EBI and AstraZeneca, will be to investigate the applications of machine learning and AI in predicting the results of recombinant protein expression experiments and develop computational tools thereof. Thanks, Sergio

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bioinformatician vacancy post
by Miao Chien 11 Oct '22

11 Oct '22

Hi, I am currently looking for bioinformaticians (PhD or postdoc). Can you help me post the following vacancy link? Thank you! https://www.academictransfer.com/nl/318345/phd-postdoc-in-bioinformatics-on… Best, Miao Miao-Ping Chien Principal Investigator, Oncode Institute Assistant professor, Department of Molecular Genetics Erasmus MC Cancer Institute, Erasmus University Medical Center, 3000 CA Rotterdam, The Netherlands Room 834a; Tel: +31 10 704 3073 m.p.chien(a)erasmusmc.nl<mailto:m.p.chien@erasmusmc.nl> www.mpchienlab.org

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online Introduction to Metagenomics and metabarcoding course 17th-20th October 2022, 10-3 PM
by Edinburgh Genomics Admin 10 Oct '22

10 Oct '22

Dear All, We have a few spaces left on our online Introduction to Metagenomics and metabarcoding course this month. This course explores the tools and approaches used to process and analyse metagenomics data using both short Illumina and long Oxford Nanopore reads. You will be familiarised with the challenges which are typically encountered in the analysis of such data, and provide solutions to overcome these problems. Here are the details: When: 17th-20th October 2022, 10-3 PM Website: https://genomics.ed.ac.uk/services/introduction-metagenomic-data-analysis Tutors: Heleen De Weerd (Bioinformatics Data Analyst, Edinburgh Genomics) and Nathan Medd (Training Manager, Edinburgh Genomics) Where: Online Please forward this to anyone you think might be interested. Best regards, Urmi -- Urmi Trivedi Bioinformatics Team Leader Edinburgh Genomics, The University of Edinburgh Ashworth Laboratories, Charlotte Auerbach Road, Edinburgh EH9 3FL, Scotland, UK. =============================================================== The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th' ann an Oilthigh Dh?n ?ideann, cl?raichte an Alba, ?ireamh cl?raidh SC005336.

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