November 2022 - BBClist - maillist.psb.ugent.be

PhD position in Integrating of multiple -omics datasets
by Claesen Jürgen 04 Jun '24

04 Jun '24

Dear all, SCK CEN and UHasselt are looking for candidates for a PhD project with the title: "Integromics - Towards integration of big biomolecular data to enable systems biology" Description The last decades, development of high-throughput technologies such as next-generation sequencing, microarrays and mass spectrometry has led to a paradigm shift in biology and life sciences. Where previously one biomolecule (for example, a gene, or a protein) was studied as a single entity, these experimental techniques allow to study a set of biomolecules (for example, the genome or the proteome) in one go and in a limited amount of time. While, at first, experiments were analyzed independently from each other, combining information of several experimental techniques, and correlating them with environmental and/or clinical parameters, is, nowadays, of great interest. As a consequence, novel statistical and computational methodologies for the analysis of multi-omics datasets have to be developed, allowing a multi-dimensional view on complex biological processes. In this PhD project, we aim at the development of computational methods for the analysis of multi-omics datasets, that are commonly generated by the three biology units of SCK*CEN, which will improve the understanding and valorization of the data, and which will keep the biology units up to date with current developments in biology and bioinformatics. Profile and diploma As a doctorate researcher you will join the dynamic bioinformatics team at SCK CEN and CenStat (UHasselt). A successful candidate should have : * A master degree in biostatistics/applied statistics/bioinformatics/statistical bioinformatics. * You are acquainted with statistical methodologies and had exposure to computer programming in SAS/R/Winbugs/Python. * You can work independently and within a team. * You have excellent communication skills. * You are interested to develop new methodology from both theoretical and applied aspects. * You enjoy working in a multidisciplinary and multicultural environment. * You are willing to closely collaborate with biologists/biostatisticians. * You speak and write English fluently. * You have work experience with at least two different "omics" platforms. For more information contact: Dr. Claesen Jürgen (SCK-CEN), jclaesen(a)sckcen.be<https://academy.sckcen.be/en/Mailform?contactid=b22040b5-cf18-496f-a82a-3bc…> Prof. Shkedy Ziv (Hasselt University), ziv.shkedy(a)uhasselt.be<https://academy.sckcen.be/en/Mailform?contactid=51ae7733-8006-4347-b211-9a4…> Link to the project in SCK-CEN: https://academy.sckcen.be/en/Your_thesis_internship/AllTopics/Integromics--… Kind Regards, Jürgen

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PostDoc position Machine learning towards studying meiotic recombination
by Dijk, Aalt-Jan van 30 Nov '22

30 Nov '22

In the Bioinformatics group of Wageningen University a PostDoc position is available on machine learning for studying meiotic recombination, in a collaboration with various experimental groups (Genetics, Biosystematics, Plant Breeding). More information can be found via https://www.wur.nl/en/vacancy/postdoc-machine-learning-towards-studying-mei… You can apply until December 12. Best regards, Aalt-Jan van Dijk Associate professor Bioinformatics Group, Wageningen University

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Two postdoc positions in machine learning for single-cell genomics
by Laura CANTINI 30 Nov '22

30 Nov '22

Dear colleague, I have an opening for *two postdoc positions in machine learning for single-cell genomics* in my team, currently at École Normale Supérieure (ENS https://www.ens.psl.eu/en) and soon (Jan 2023) joining Institut Pasteur (https://www.pasteur.fr/fr) The team is also part of the PaRis Artificial Intelligence Research InstitutE (PRAIRIE https://prairie-institute.fr/) The extended text of the call is attached. I would be grateful if you could forward the enclosed description to potentially interested candidates or colleagues. Best, Laura Cantini

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PhD Positions in Computational Research, Data Science and AI at the German Cancer Research Center (DKFZ)
by DKFZ PhD Program 28 Nov '22

28 Nov '22

Dear Colleague, I would like to draw your attention to our International PhD Program at the German Cancer Research Center (DKFZ) in Heidelberg, Germany, which might be of interest to your students who are seeking further research in the area of Computational Research, Data Science and Artificial Intelligence. The application deadline is 15. December 2022 and more information about the program and how to apply online can be found here<https://www.dkfz.de/en/phd-program/index.html?campaign=phd/compmsc>. I would be very grateful if you could forward this information and the infosheet attached to potential candidates at your institution. If you prefer not to receive similar e-mails in the future, please do not hesitate to contact me. Many thanks and best wishes, Michaela Steiner PhD Program Office DKFZ International PhD Program (M070) German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany phone: +49 6221 42-3426 www.dkfz.de<http://www.dkfz.de/>/phd [cid:image003.jpg@01D37287.86ACA850] Management Board: Prof. Dr. med. Michael Baumann, Ursula Weyrich VAT-ID No.: DE143293537

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Last CFP OLA'2023 @Malaga (Spain)
by El-Ghazali Talbi 24 Nov '22

24 Nov '22

Apologies for cross-posting. Appreciate if you can distribute this CFP to your network. **************************************************************************************** OLA'2023 International Conference on Optimization and Learning 3-5 May 2023 Malaga, Spain http://ola2023.sciencesconf.org/ SCOPUS Springer Proceedings **************************************************************************************** OLA is a conference focusing on the future challenges of optimization and/or machine learning methods and their applications. The conference OLA'2023 will provide an opportunity to the international research community in optimization and learning to discuss recent research results and to develop new ideas and collaborations in a friendly and relaxed atmosphere. OLA'2023 welcomes presentations that cover any aspects of optimization and/or machine learning research such as big optimization and learning, optimization for learning, learning for optimization, optimization and learning under uncertainty, deep learning, new high-impact applications, parameter tuning, 4th industrial revolution, computer vision, hybridization issues, optimization-simulation, meta-modeling, high-performance computing, parallel and distributed optimization and learning, surrogate modeling, multi-objective optimization ... Submission papers: We will accept two different types of submissions: - S1: Extended abstracts of work-in-progress and position papers of a maximum of 3 pages - S2: Original research contributions of a maximum of 10 pages Important dates: =============== Paper submission extended deadline Dec 16, 2022 Notification of acceptance Feb 17, 2023 Proceedings: Accepted papers in categories S1 and S2 will be published in the proceedings. A SCOPUS and DBLP indexed Springer book will be published for accepted long papers. Proceedings will be available at the conference. Prof. El-ghazali TALBI University of Lille - CRISTAL UMR CNRS INRIA Lille Nord Europe ************************************************** OLA'2023 Int. Conf on Optimization and Learning May 3-5, 2023, Malaga, Spain http://ola2023.sciencesconf.org **************************************************

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Postdoc position rose pangenomics
by Smit, Sandra 23 Nov '22

23 Nov '22

The Genome Biology Unit of Wageningen University is looking for a postdoc to explore diversity in a rose pangenome. The vacancy will be open until Dec 1st and the description can be found here: https://www.wur.nl/en/vacancy/postdoc-position-exploring-diversity-in-a-ros… Are you interested in genetic diversity in one of the world’s most well-known plant species and are you ready to contribute to this state-of-the-art genomics project with your extensive bioinformatics experience? We look forward to your application. Kind regards, Sandra --- Sandra Smit Assistant professor Bioinformatics Group Wageningen University The Netherlands Sandra.Smit(a)wur.nl ---

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Bioinformatician position at the Spanish National Cancer Research Center (CNIO)
by Eva Alloza 23 Nov '22

23 Nov '22

Dear all, The Bioinformatics Unit <https://www.cnio.es/en/research-innovation/scientific-programmes/structural…> at the Spanish National Cancer Research Center (CNIO) in Madrid, Spain, and part of INB/ELIXIR-ES, has an *open position for a bioinformatician*. The selected candidate will work in the collection, analysis, and interpretation of biological/clinical data, with a focus on high-throughput sequencing data. He/She will design data analysis strategies and develop and use computational tools for the exploration of large cancer data sets. The vacancy will be open until December 5th and the description can be found here: https://www.cnio.es/en/empleo/advanced-degree-for-the-bioinformatics-unit-t… Best regards, -- -- Eva Alloza Training coordinator and support officer Spanish National Bioinformatics Institute (INB/ELIXIR-ES) coordination node mail:eva.alloza@bsc.es web:http://inb-elixir.es Barcelona Supercomputing Center (BSC-CNS) Pl. Eusebi Güell, 1-3. E-08034 Barcelona, Spain

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PhD project in UHasselt and SCK-CEN
by Ziv SHKEDY 22 Nov '22

22 Nov '22

Dear, Can you please forward and share this email with your e-mail list ? It is about a new PhD project in DSI-UHasselt. Please CC Prof. Jurgen Claesen ( jurgen.claesen(a)uhasselt.be) on the email. Thanks in advance, ziv shkedy & Jurgen Claesen . *A 4 years full time PhD project in DSI, UHasselt & SCK-CEN.* *Title: Integromics - Towards integration of big biomolecular data to enable systems biology* The last decades, development of high-throughput technologies such as next-generation sequencing, microarrays and mass spectrometry has led to a paradigm shift in biology and life sciences. Where previously one biomolecule (for example, a gene, or a protein) was studied as a single entity, these experimental techniques allow to study a set of biomolecules (for example, the genome or the proteome) in one go and in a limited amount of time. While, at first, experiments were analysed independently from each other, combining information of several experimental techniques, and correlating them with environmental and/or clinical parameters, is, nowadays, of great interest. As a consequence, novel statistical and computational methodologies for the analysis of multi-omics datasets have to be developed, allowing a multi-dimensional view on complex biological processes. The PhD project is a joint project between CenStat, DSI and SCK•CEN ( https://www.sckcen.be/en) The thesis project is focused on methodologies for the analysis of multi-omics datasets allowing a multi-dimensional view on complex biological processes. In the current thesis project, we focus on methods for the analysis of multi-omics datasets (gene expression, proteomics etc), that are commonly generated by the three biology units of SCK•CEN (https://www.sckcen.be/en) which will improve the understanding of the biological data of interest. The datasets for the project are already available and will be provided (with R program to read the data) at the beginning of the project. Starting date: during the second part of 2023. Project duration: 4 years. Student's profile: MSc in biostatistics/statistics/bioinformatics or equivalent. Supervision UHasselt: Prof. Ziv Shkedy (ziv.shkedy(a)uhasselt.be) and Prof. Jurgen claesen (jurgen.claesen(a)uhasselt.be) Supervision SCK-CEN Dr. Surya Gupta (surya.gupta(a)sckcen.be)

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Vacancy for a PhD student in microbial genomics, bioinformatics, and systems biology
by Stefan WECKX 22 Nov '22

22 Nov '22

Dear all, The Research Group of Industrial Microbiology and Food Biotechnology (IMDO) of the Vrije Universiteit Brussel (https://imdo.vub.ac.be) Belgium, is looking for a highly motivated PhD student to perform PhD research in the framework of the HealthFerm project (Horizon Europe; https://www.healthferm.eu/) The overall aim of this project is to unravel the interactions between the microbiota of cereal-based fermented foods, in particular sourdough and borş, and the human gut microbiome and health. More in detail, the PhD student will perform genotypic characterization of a selection of microorganisms obtained by the project consortium by means of advanced genome sequencing (second and/or third generation sequencing methodologies), gene prediction, and functional annotation. Genome-wide metabolic models will be made for a selection of promising microorganisms to better understand and predict their metabolism and physiology. The candidate needs to have a university degree at Master level (Bioengineering Sciences or an equivalent degree), with in-depth knowledge of and interest in (food) microbiology, biochemistry, bioinformatics, including hands-on experience with Linux and scripting (Python, R), fermentation technology, and/or food science and technology. Important additional qualifications are sense of initiative and responsibility, group spirit, motivation and dynamism, a hardworking attitude, persistence, and good communication and reporting skills. Good knowledge of the English language (spoken and written) is required. The candidate will be embedded in a young, creative, dynamic, pluralistic, diverse, and international working environment. Salary according to the applicable scales for PhD students. Benefits according to the university's general benefits scheme (https://jobs.vub.be/content/Benefits/) If interested, please contact and send your application letter with curriculum vitae and Transcript of Records to Prof. Dr. Stefan Weckx, stefan.weckx(a)vub.be<mailto:stefan.weckx@vub.be>. Thank you for spreading this vacancy announcement within your network. Best regards, Stefan Weckx [Logo VUB]<http://www.vub.ac.be/> Prof. Dr. Stefan WECKX Research Group of Industrial Microbiology and Food Biotechnology Department of Bioengineering Sciences Faculty of Sciences and Bioengineering Sciences Vrije Universiteit Brussel VUB - IMDO - Pleinlaan 2 - 1050 Brussels - Belgium T +32 (0)2 629 38 63 (direct) T +32 (0)2 629 32 45 (secretary) F +32 (0)2 629 27 20 E stefan.weckx(a)vub.be<mailto:stefan.weckx@vub.be> www.vub.be<http://www.vub.be/> - imdo.vub.ac.be<http://imdo.vub.ac.be/> - disclaimer<http://huisstijl.vub.ac.be/styleguide/disclaimer> [http://www.vub.ac.be/sites/vub/files/Handtekening/triangle.png]

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R&D Data Sciences & AI Graduate Programme - AstraZeneca UK
by Sergio Martinez Cuesta 22 Nov '22

22 Nov '22

If you have a quantitative science focussed bachelor’s or master’s degree and a desire to explore and develop your skills in data science and artificial intelligence within a global biopharmaceutical organisation, our R&D Data Science & AI Graduate Programme could be the perfect start to your career. You’ll gain invaluable insight, exposure and opportunities across our diverse, Research and Development organisation. We’ll accelerate your learning and help you achieve your potential. To find out more, please check: https://careers.astrazeneca.com/job/cambridge/r-and-d-data-sciences-and-ai-… Thanks, Sergio

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